Ss1.1-rthg12_d22.5
|
GACTTTTGTTTGAATGAGCTGCTTCATGTGCAGAGGTTGTCACGGTCACTGGATTATCTT
TAATGAAATTGGAAATGGATGTACAGGCAAGTTGGTGATGTCTTCAGGAGTCGTAGTAGC
AGCAGGTCACAGACCAGCAGGGCAGCTGTGCTGTGAATTCCTGTTGGATTCAGCTTCGCC
TCGTGGGCTGGGGAGGGAGAACCATCTGCAGCTTCAATTAGCAAACTCCGGGCTTCACTT
AGACGCAGCAGTGAGAAGCTGGTTAGGAAGCTGAAGGGAGGAAGTTCTCGAGAGAGTGAG
CCGAGGAACGCCGGGCTGTCTCCAGCAGAGGCCCTTTTTGTGGAGAATGGCAGCAGCAGC
AGTGGCCTGGAGGACACGAACCTTAACTGAGGCTGCACCTGGGCCTGGGAGAGCCGGCAC
AGCGCTGCTTGTGTGTGTCCAGAGCAGGCCCTGTGACAGCCAGGGGACGGTCGCGGAGGC
TGGAGGGCCTGGAGCACCACATCTTCTGTGTCCCCGCGCCCTGGGCCCCGTCAGACTAAC
AGCCACACCACTGCTGGGACACGCTCGCTTGCGAAGCCCCGGTCACGCTTGGCCCCTGGA
GGACGTTCTGCCCCTGACGAGCTGTGTCCTGAACCGCCTGGAAAAGGCCACTGGCTGTCC
GGGCTCTTGTGCCATTTCCCATCCTGTTATCTGCCCCCACGCTCCATGTGATAATGTATT
TTACTGTAAATTTTTTTAAAATTAAAAGTTTATACATCTTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GACTTTTGTTTGAATGAGCTGCTTCATGTGCAGAGGTTGTCACGGTCACTGGATTATCTT
TAATGAAATTGGAAATGGATGTACAGGCAAGTTGGTGATGTCTTCAGGAGTCGTAGTAGC
AGCAGGTCACAGACCAGCAGGGCAGCTGTGCTGTGAATTCCTGTTGGATTCAGCTTCGCC
TCGTGGGCTGGGGAGGGAGAACCATCTGCAGCTTCAATTAGCAAACTCCGGGCTTCACTT
AGACGCAGCAGTGAGAAGCTGGTTAGGAAGCTGAAGGGAGGAAGTTCTCGAGAGAGTGAG
CCGAGGAACGCCGGGCTGTCTCCAGCAGAGGCCCTTTTTGTGGAGAATGGCAGCAGCAGC
AGTGGCCTGGAGGACACGAACCTTAACTGAGGCTGCACCTGGGCCTGGGAGAGCCGGCAC
AGCGCTGCTTGTGTGTGTCCAGAGCAGGCCCTGTGACAGCCAGGGGACGGTCGCGGAGGC
TGGAGGGCCTGGAGCACCACATCTTCTGTGTCCCCGCGCCCTGGGCCCCGTCAGACTAAC
AGCCACACCACTGCTGGGACACGCTCGCTTGCGAAGCCCCGGTCACGCTTGGCCCCTGGA
GGACGTTCTGCCCCTGACGAGCTGTGTCCTGAACCGCCTGGAAAAGGCCACTGGCTGTCC
GGGCTCTTGTGCCATTTCCCATCCTGTTATCTGCCCCCACGCTCCATGTGATAATGTATT
TTACTGTAAATTTTTTTAAAATTAAAAGTTTATACATCTTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
|
gi|2330585|emb|CAA74927.1| |
Protein identifier
|
gi|2330585|emb|CAA74927.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
218-326, gnl|bosTau2|chr21 (48124243-48124354) |
|
218-326, gnl|canFam2|chr8 (74480676-74480799) |
|
218-326, gnl|danRer3|chr13 (13021927-13022049) |
|
218-326, gnl|dasNov1|scaffold_21026 (11154-11277) |
|
218-326, gnl|echTel1|scaffold_283964 (15828-15727) |
|
218-326, gnl|fr1|chrUn (89440402-89440284) |
|
218-326, gnl|galGal2|chr5 (47253515-47253638) |
|
218-326, gnl|hg17|chr14 (103223188-103223311) |
|
218-326, gnl|Hg17|chr14 (103223205-103223319) |
|
218-326, gnl|loxAfr1|scaffold_27717 (37946-38069) |
|
218-326, gnl|mm7|chr12 (109320309-109320432) |
|
218-326, gnl|Mm7|chr12 (109320326-109320437) |
|
218-326, gnl|monDom2|scaffold_6 (88335811-88335934) |
|
218-326, gnl|oryCun1|scaffold_61085 (989-1114) |
|
218-326, gnl|panTro1|chr15 (103849575-103849698) |
|
218-326, gnl|rheMac2|chr7 (167046313-167046436) |
|
218-326, gnl|rn3|chr6 (136593226-136593349) |
|
218-326, gnl|tetNig1|chr10 (12522931-12523056) |
|
218-326, gnl|xenTro1|scaffold_127 (1688007-1688130) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
218-326, gnl|bosTau2|chr21 (48124243-48124354) |
|
218-326, gnl|canFam2|chr8 (74480676-74480799) |
|
218-326, gnl|danRer3|chr13 (13021927-13022049) |
|
218-326, gnl|dasNov1|scaffold_21026 (11154-11277) |
|
218-326, gnl|echTel1|scaffold_283964 (15828-15727) |
|
218-326, gnl|fr1|chrUn (89440402-89440284) |
|
218-326, gnl|galGal2|chr5 (47253515-47253638) |
|
218-326, gnl|hg17|chr14 (103223188-103223311) |
|
218-326, gnl|Hg17|chr14 (103223205-103223319) |
|
218-326, gnl|loxAfr1|scaffold_27717 (37946-38069) |
|
218-326, gnl|mm7|chr12 (109320309-109320432) |
|
218-326, gnl|Mm7|chr12 (109320326-109320437) |
|
218-326, gnl|monDom2|scaffold_6 (88335811-88335934) |
|
218-326, gnl|oryCun1|scaffold_61085 (989-1114) |
|
218-326, gnl|panTro1|chr15 (103849575-103849698) |
|
218-326, gnl|rheMac2|chr7 (167046313-167046436) |
|
218-326, gnl|rn3|chr6 (136593226-136593349) |
|
218-326, gnl|tetNig1|chr10 (12522931-12523056) |
|
218-326, gnl|xenTro1|scaffold_127 (1688007-1688130) |
|
med (0.348756) |
|
hyp (0.285673) |
|
ese (0.253004) |
|
fcc (0.197785) |
|
nep (0.183925) |
|
fty (0.17584) |
|
sin (0.174948) |
|
fat (0.147427) |
|
nca (0.136874) |
|
che (0.136314) |
|
pla (0.133672) |
|
thg (0.126791) |
|
clu (0.119646) |
|
ecc (0.115035) |
|
med (0.348756) |
|
hyp (0.285673) |
|
ese (0.253004) |
|
fcc (0.197785) |
|
nep (0.183925) |
|
fty (0.17584) |
|
sin (0.174948) |
|
fat (0.147427) |
|
nca (0.136874) |
|
che (0.136314) |
|
pla (0.133672) |
|
thg (0.126791) |
|
clu (0.119646) |
|
ecc (0.115035) |
