Non-Coding RNA Search

Ss1.1-rthg12_g3.5

Sequence:


               
               GTTCAGAGGAATCTGTCTCCACTGTAGAAGAACAAGAGAATGAAACTCCACCTGCTACAT
CTAGTGAGGCAGAGCAGCCAAAGGGGGAACCTGAGAATGAAGAGAAGGAAGAAAACAAGC
CTTCTGAGGAAACCAAAAAGGAGCATGCTTCCAGAAGAGTGGTGCGTCTGTGGTTGCTAT
TCGAAAATACATCATCCATAAGTACCCTTCTCTGGAGCTAGAGAGAAGGGGCTACCTCCT
TAAACAAGCGCTGAAAAGAGAATTAAATAGAGGTGTTATTAAACAGGTAAAAGGAAAAGG
TGCTTCTGGGAGTTTTATTGTGGTCCAAAAATCAAGAAAAACACCTCAGAAATCCAGAAA
CAGAAAGAACAGGAGCTCTGCAGTGAATCCAGAACCACAAGTAAAATTGGAAGATATCCT
CCCACTGGCCTTTACCCGCCTTTGTGAACCTAAAGAAGCTTCCTACAGTCTCATCAGGAA
ATATGTGTCTCAGTATTACCCTAAACTTAGAGTGGACATCAGGCCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCAGAGGAATCTGTCTCCACTGTAGAAGAACAAGAGAATGAAACTCCACCTGCTACAT
CTAGTGAGGCAGAGCAGCCAAAGGGGGAACCTGAGAATGAAGAGAAGGAAGAAAACAAGC
CTTCTGAGGAAACCAAAAAGGAGCATGCTTCCAGAAGAGTGGTGCGTCTGTGGTTGCTAT
TCGAAAATACATCATCCATAAGTACCCTTCTCTGGAGCTAGAGAGAAGGGGCTACCTCCT
TAAACAAGCGCTGAAAAGAGAATTAAATAGAGGTGTTATTAAACAGGTAAAAGGAAAAGG
TGCTTCTGGGAGTTTTATTGTGGTCCAAAAATCAAGAAAAACACCTCAGAAATCCAGAAA
CAGAAAGAACAGGAGCTCTGCAGTGAATCCAGAACCACAAGTAAAATTGGAAGATATCCT
CCCACTGGCCTTTACCCGCCTTTGTGAACCTAAAGAAGCTTCCTACAGTCTCATCAGGAA
ATATGTGTCTCAGTATTACCCTAAACTTAGAGTGGACATCAGGCCTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-118, + strand, RNAz p=0.968789

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, + strand, RNAz p=0.968789

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK023129, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK023129, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-143, gnl|bosTau2|chr2 (85750769-85750627)
               

               
               1-143, gnl|canFam2|chr2 (81066432-81066234)
               

               
               1-143, gnl|dasNov1|scaffold_3312 (40806-40608)
               

               
               1-143, gnl|echTel1|scaffold_305677 (42692-42887)
               

               
               1-143, gnl|galGal2|chrUn (86378297-86378479)
               

               
               1-143, gnl|hg17|chr1 (20848387-20848584)
               

               
               1-143, gnl|Hg17|chr1 (20848537-20848395)
               

               
               1-143, gnl|loxAfr1|scaffold_40549 (14488-14290)
               

               
               1-143, gnl|mm7|chr4 (137602101-137601905)
               

               
               1-143, gnl|Mm7|chr4 (137601943-137602091)
               

               
               1-143, gnl|monDom2|scaffold_90 (2246368-2246565)
               

               
               1-143, gnl|oryCun1|scaffold_192571 (42486-42684)
               

               
               1-143, gnl|panTro1|chr1 (21170525-21170722)
               

               
               1-143, gnl|rheMac2|chr1 (23445448-23445645)
               

               
               1-143, gnl|rn3|chr5 (157013963-157013773)
               

               
               1-143, gnl|xenTro1|scaffold_1087 (84600-84393)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-143, gnl|bosTau2|chr2 (85750769-85750627)
               

               
               1-143, gnl|canFam2|chr2 (81066432-81066234)
               

               
               1-143, gnl|dasNov1|scaffold_3312 (40806-40608)
               

               
               1-143, gnl|echTel1|scaffold_305677 (42692-42887)
               

               
               1-143, gnl|galGal2|chrUn (86378297-86378479)
               

               
               1-143, gnl|hg17|chr1 (20848387-20848584)
               

               
               1-143, gnl|Hg17|chr1 (20848537-20848395)
               

               
               1-143, gnl|loxAfr1|scaffold_40549 (14488-14290)
               

               
               1-143, gnl|mm7|chr4 (137602101-137601905)
               

               
               1-143, gnl|Mm7|chr4 (137601943-137602091)
               

               
               1-143, gnl|monDom2|scaffold_90 (2246368-2246565)
               

               
               1-143, gnl|oryCun1|scaffold_192571 (42486-42684)
               

               
               1-143, gnl|panTro1|chr1 (21170525-21170722)
               

               
               1-143, gnl|rheMac2|chr1 (23445448-23445645)
               

               
               1-143, gnl|rn3|chr5 (157013963-157013773)
               

               
               1-143, gnl|xenTro1|scaffold_1087 (84600-84393)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               thg (0.126791)
               

               
               eep (0.122564)
               

               
               clu (0.119646)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               clu (0.119646)

	1-143, gnl\|bosTau2\|chr2 (85750769-85750627)
	1-143, gnl\|canFam2\|chr2 (81066432-81066234)
	1-143, gnl\|dasNov1\|scaffold_3312 (40806-40608)
	1-143, gnl\|echTel1\|scaffold_305677 (42692-42887)
	1-143, gnl\|galGal2\|chrUn (86378297-86378479)
	1-143, gnl\|hg17\|chr1 (20848387-20848584)
	1-143, gnl\|Hg17\|chr1 (20848537-20848395)
	1-143, gnl\|loxAfr1\|scaffold_40549 (14488-14290)
	1-143, gnl\|mm7\|chr4 (137602101-137601905)
	1-143, gnl\|Mm7\|chr4 (137601943-137602091)
	1-143, gnl\|monDom2\|scaffold_90 (2246368-2246565)
	1-143, gnl\|oryCun1\|scaffold_192571 (42486-42684)
	1-143, gnl\|panTro1\|chr1 (21170525-21170722)
	1-143, gnl\|rheMac2\|chr1 (23445448-23445645)
	1-143, gnl\|rn3\|chr5 (157013963-157013773)
	1-143, gnl\|xenTro1\|scaffold_1087 (84600-84393)