Non-Coding RNA Search

Ss1.1-rthg13_d3.5

Sequence:


               
               GAGGCACACAGTTAGTGAGACTCTTTAGGCCTTTGGGGAAGGAGAGGGTATGCTCCCAAG
GCAAGAGAACTGGGAATGGGTGGCCAGCCTCTTCTTCCCAATGGGATTCTTTTTATACCT
TGACCATCCCTTCACTGTCGATGGTCTACCCACCTCAGCAGGCTGTGTAGCCTCTACCCT
CAGTCATGAGAGGGCAGACTGGCCAGAGTGCAGTGTCCTGCTGTGGTCAAGGCCAAAGTA
TGCTCCGAGCCCGGAAACACCTGGAAACCCCTTTCAGGACCTGGTCCCCCAAACAATCTC
TTCTTGGCCAGCACAGGGAAATCCAGACTCAGGGTTCCAAAAATTCCCCACTCCCAAACC
AAACAAATCATGGATCTCCCCCTTAAGGGGTAGACTCAGCCTTTCAGAGTGCAATCATCA
TGAAAAGGGAGCATGTCCCATAGAATCAGCCTCCCTCCACCTCCCCTTAGAGCAGTGGGA
AGGGCCCAGCGGTCCCACTGCCCTGCTCCTATGCTGCTGGCCTGCAGTGAGGGCCCACTT
CTCTATTCTGCAGTGTTCCTTAGAGAAGTGACACAGCCTGTAAGAGACATGAAGCACCTT
TCCTCAGCTTTGATGTGGTCCAAAAAGAGCCTTAAATCAAGAATATTTGGTGGAGGTGGA
TATAGAGAAGGGTGGAGAGGAGTTAAGGTTTGTGTTTTATGATCTTGGCATCCATGTTTT
GTGCCTGCCCTCCCTCTTGGGGGAAGGGCCATGCTTGGCTCTGCTAAAAGCTGCTGTCAC
AGCAGATTGTGGTGTGCAGTGGGGGCAAGGCTGGGGAACTCTCCTGACCCTTTGGATGCA
GTTCCCTGGCCAAGGGCAAGTTGTGTCTCAGGAAGGTGGCTCCTGGGTGCACCTGGGTGT
AGTTAAGATGTGGCCAGAAGCCTTTCCTGGAGTTATCAGTCCAGGCAAAAGCCAAGAGCA
TCTGAGAACGTCTTTGACTTCCCAGTGGCAGCAGGTTGCTTGGAATTTGAATTTAGTGAA
ACAGGGTGTAAGTTCTTCTCCGCACTCTGTGTGTGGTCTGGCCTTGCAGGTAGGGAGAAG
TCAGTCTAATTGAAGATTGTGCACTTCCTAGTGACAGGTGCCAAGAGGTTATGATACGGG
TTTCTTGGGTCTGGTGTACAGTGTGAATAAATGCTTGCAGCTCTTAGCTCTTTTTTGATC
AATGAAGCACTTTTTTATTAATATTTTTCTTTGTAAAGGAGGAACCGTAACTCTCCGTAG
CTGTACATATAACCCTTTTCTTCTAAAGAGGAGTCAGTCAGTGCTCCTATATTTTTCATT
TTTGTCAAAGCAAGAAGTAAATACTTTAGAACTGTTAAATATATAAATAAAGTGAATAAA
GTTTAGTGTTCCGCATGGTAGCATTTGCTAACAATGTTCTAATTCTTTTCCCTGCAGTTT
GTTTCCTTTCATCCCATTTCCCTTTTAACAGAAGCAATTTGAGGTGCTGCTGAGAACGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCACACAGTTAGTGAGACTCTTTAGGCCTTTGGGGAAGGAGAGGGTATGCTCCCAAG
GCAAGAGAACTGGGAATGGGTGGCCAGCCTCTTCTTCCCAATGGGATTCTTTTTATACCT
TGACCATCCCTTCACTGTCGATGGTCTACCCACCTCAGCAGGCTGTGTAGCCTCTACCCT
CAGTCATGAGAGGGCAGACTGGCCAGAGTGCAGTGTCCTGCTGTGGTCAAGGCCAAAGTA
TGCTCCGAGCCCGGAAACACCTGGAAACCCCTTTCAGGACCTGGTCCCCCAAACAATCTC
TTCTTGGCCAGCACAGGGAAATCCAGACTCAGGGTTCCAAAAATTCCCCACTCCCAAACC
AAACAAATCATGGATCTCCCCCTTAAGGGGTAGACTCAGCCTTTCAGAGTGCAATCATCA
TGAAAAGGGAGCATGTCCCATAGAATCAGCCTCCCTCCACCTCCCCTTAGAGCAGTGGGA
AGGGCCCAGCGGTCCCACTGCCCTGCTCCTATGCTGCTGGCCTGCAGTGAGGGCCCACTT
CTCTATTCTGCAGTGTTCCTTAGAGAAGTGACACAGCCTGTAAGAGACATGAAGCACCTT
TCCTCAGCTTTGATGTGGTCCAAAAAGAGCCTTAAATCAAGAATATTTGGTGGAGGTGGA
TATAGAGAAGGGTGGAGAGGAGTTAAGGTTTGTGTTTTATGATCTTGGCATCCATGTTTT
GTGCCTGCCCTCCCTCTTGGGGGAAGGGCCATGCTTGGCTCTGCTAAAAGCTGCTGTCAC
AGCAGATTGTGGTGTGCAGTGGGGGCAAGGCTGGGGAACTCTCCTGACCCTTTGGATGCA
GTTCCCTGGCCAAGGGCAAGTTGTGTCTCAGGAAGGTGGCTCCTGGGTGCACCTGGGTGT
AGTTAAGATGTGGCCAGAAGCCTTTCCTGGAGTTATCAGTCCAGGCAAAAGCCAAGAGCA
TCTGAGAACGTCTTTGACTTCCCAGTGGCAGCAGGTTGCTTGGAATTTGAATTTAGTGAA
ACAGGGTGTAAGTTCTTCTCCGCACTCTGTGTGTGGTCTGGCCTTGCAGGTAGGGAGAAG
TCAGTCTAATTGAAGATTGTGCACTTCCTAGTGACAGGTGCCAAGAGGTTATGATACGGG
TTTCTTGGGTCTGGTGTACAGTGTGAATAAATGCTTGCAGCTCTTAGCTCTTTTTTGATC
AATGAAGCACTTTTTTATTAATATTTTTCTTTGTAAAGGAGGAACCGTAACTCTCCGTAG
CTGTACATATAACCCTTTTCTTCTAAAGAGGAGTCAGTCAGTGCTCCTATATTTTTCATT
TTTGTCAAAGCAAGAAGTAAATACTTTAGAACTGTTAAATATATAAATAAAGTGAATAAA
GTTTAGTGTTCCGCATGGTAGCATTTGCTAACAATGTTCTAATTCTTTTCCCTGCAGTTT
GTTTCCTTTCATCCCATTTCCCTTTTAACAGAAGCAATTTGAGGTGCTGCTGAGAACGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               263-381, - strand, RNAz p=0.899036

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               263-381, - strand, RNAz p=0.899036

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               297-430, - strand, RNAmicro p=0.995368

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               297-430, - strand, RNAmicro p=0.995368

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               225-473, gnl|bosTau2|chr17 (42243328-42243572)
               

               
               225-473, gnl|Hg17|chr22 (28747181-28747432)
               


               
               500-1496, gnl|bosTau2|chr17 (42243576-42244568)
               

               
               500-1496, gnl|Hg17|chr22 (28747465-28748498)
               

               
               500-1496, gnl|Mm7|chr11 (4433810-4432779)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               225-473, gnl|bosTau2|chr17 (42243328-42243572)
               

               
               225-473, gnl|Hg17|chr22 (28747181-28747432)
               


               
               500-1496, gnl|bosTau2|chr17 (42243576-42244568)
               

               
               500-1496, gnl|Hg17|chr22 (28747465-28748498)
               

               
               500-1496, gnl|Mm7|chr11 (4433810-4432779)

Expressed library(ies): 28 entry(ies)

More info

Expressed library(ies): 28 entry(ies)

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               bla (0.497389)
               

               
               amn (0.417711)
               

               
               ssp (0.406559)
               

               
               cut (0.339847)
               

               
               cty (0.31224)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               ste (0.270416)
               

               
               pgl (0.236967)
               

               
               jca (0.22792)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.497389)
               

               
               amn (0.417711)
               

               
               ssp (0.406559)
               

               
               cut (0.339847)
               

               
               cty (0.31224)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               ste (0.270416)
               

               
               pgl (0.236967)
               

               
               jca (0.22792)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)

	225-473, gnl\|bosTau2\|chr17 (42243328-42243572)
	225-473, gnl\|Hg17\|chr22 (28747181-28747432)

	500-1496, gnl\|bosTau2\|chr17 (42243576-42244568)
	500-1496, gnl\|Hg17\|chr22 (28747465-28748498)
	500-1496, gnl\|Mm7\|chr11 (4433810-4432779)

	bla (0.497389)
	amn (0.417711)
	ssp (0.406559)
	cut (0.339847)
	cty (0.31224)
	bfe (0.299715)
	fat (0.294855)
	ste (0.270416)
	pgl (0.236967)
	jca (0.22792)
	cmu (0.186393)
	sag (0.182715)
	sto (0.179824)
	ill (0.175593)
	sin (0.174948)
	cki (0.165235)
	cje (0.165235)
	fco (0.157208)
	isp (0.150376)
	hyp (0.142837)
	lnt (0.142308)
	nca (0.136874)
	pla (0.133672)
	ute (0.132784)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)