Non-Coding RNA Search

Ss1.1-rthg13_f12.5

Sequence:


               
               CCCAGGGGGTGGCGCCATCCCCTCCCCATAGACCCACACACCTGGCTGGGACTTTCCGAG
CACCCCTGCTCCCCTCACCCAGCTTCCTGTTTACCCAGAGCTAGGGTGGGGCATCTGGAT
GCCTGGGTTCTCTGAACTGGGGAGGGAGTTGGGGCGCAAAGACAAGCTTTCAGGGTAGAA
CTGGAGAGGGCCTTAGAGATCTTCTGACTCAGCGGAGAGGGAAACTGAGGCCCAGGCAGG
GAAGGTAGTTTGCAGAAAATCAGGCACCTGCAGAAAGAACACAGAACTCCAGATGGCCTG
TGTGGTCTGCATTCTTCTGCACCCCACGCTGGAGGGCGTGCTGCATCCACACGCCTGAGG
CCAAGGTCTGGAAGAGGAGGACAAGACCTGGACTCTTCAGGGATGGCTGTCTAGGTCTGT
AAGAAGAACCTATTCCCACACTAGACTGACCCCCTCCTGGCATCCCCTTCCTTCCTCCAA
GCCCCCGGAGTCAGCTGAGAAAGGCAGAGTTAAGCCAGTCCATGGTGATGGCAGCTGAAG
GGAGCCTCAGCCCCACCACTGACCTGAGGACAGTGGAAATGGAGCATCACCCCCCTTGCC
ACACAGAGTGGATACAGGACAGCGATGAGGCAGCCACCCCCAAAGAGCTCCGCCGGCTAC
ACAGACCCATCATCCATTTAGTTGATGCTGACTAAGTGTTAAGTGAAGGAAGGACAAATG
AATGAATGAGTAAGCAAAGCAAGCAGTAAGGCCCAAAGGAATGGTATAGCAGGCAGTGCA
GTAGGAGTTGAAGGGAGGAAGAGCCAGGTCAATAAGTTAGAAGGGGGGCCAGATCATCTC
CCCTTCTTGACAATATCTTTGTGTGTTGGGGTAATAAGAAGAGGAAGAAGAAGAAGAAAT
TTATATATATTGTATATGTAATACTTTTAATCCTGACAAAAACTCTGAGAGGAAATCGAA
GCACAGAGACGTTAAGGAACAGGTGGAAGTTCACACAGTAGTGGTAGAGTCAGAATTTGA
ACCCGGGCAATCTGGCTCCATACCCTTAACCACAAGACAGTTTAAAAACTGAGTACTGAC
TTCAGATTTGTCCGTTTCAGGGTATGTAAATCTTGCCCTCCTCACCTGCACAAAAAAAGA
ACTAGGGAAACAAATACTGAACTTGAGTGAATGATAAACGTGGTACAGGATTTAGCAGTA
AAAGCTACTAATGTTTGCTACTTTGAAAGGTGTCAAAAAATTAGATGGATCGATAGATAT
GTGATATGCAAATGTAGAAAAATGTTAATTATGGAATTCCCTGGTGGTTCAGCAGGTTAA
GGATCCAGTGTCGTCACTGCTGCGGCTCAGGTCACAGCTGTGGTGTGGGTTCGATCCCTG
GCTTCGGAACTTCCACCTGCTGAG------------GAAAGAAAAAAAGGAAGAAAGAAA
GAAAAATGTTGATTGTAGAATCTAGGTGGTAGGGATAGGTTCACTGTACACTTTTTCAAT
ATTTTCTATGTTTGAACGTTTTAATAAAACATTTTGAAAAACTGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGGGGGTGGCGCCATCCCCTCCCCATAGACCCACACACCTGGCTGGGACTTTCCGAG
CACCCCTGCTCCCCTCACCCAGCTTCCTGTTTACCCAGAGCTAGGGTGGGGCATCTGGAT
GCCTGGGTTCTCTGAACTGGGGAGGGAGTTGGGGCGCAAAGACAAGCTTTCAGGGTAGAA
CTGGAGAGGGCCTTAGAGATCTTCTGACTCAGCGGAGAGGGAAACTGAGGCCCAGGCAGG
GAAGGTAGTTTGCAGAAAATCAGGCACCTGCAGAAAGAACACAGAACTCCAGATGGCCTG
TGTGGTCTGCATTCTTCTGCACCCCACGCTGGAGGGCGTGCTGCATCCACACGCCTGAGG
CCAAGGTCTGGAAGAGGAGGACAAGACCTGGACTCTTCAGGGATGGCTGTCTAGGTCTGT
AAGAAGAACCTATTCCCACACTAGACTGACCCCCTCCTGGCATCCCCTTCCTTCCTCCAA
GCCCCCGGAGTCAGCTGAGAAAGGCAGAGTTAAGCCAGTCCATGGTGATGGCAGCTGAAG
GGAGCCTCAGCCCCACCACTGACCTGAGGACAGTGGAAATGGAGCATCACCCCCCTTGCC
ACACAGAGTGGATACAGGACAGCGATGAGGCAGCCACCCCCAAAGAGCTCCGCCGGCTAC
ACAGACCCATCATCCATTTAGTTGATGCTGACTAAGTGTTAAGTGAAGGAAGGACAAATG
AATGAATGAGTAAGCAAAGCAAGCAGTAAGGCCCAAAGGAATGGTATAGCAGGCAGTGCA
GTAGGAGTTGAAGGGAGGAAGAGCCAGGTCAATAAGTTAGAAGGGGGGCCAGATCATCTC
CCCTTCTTGACAATATCTTTGTGTGTTGGGGTAATAAGAAGAGGAAGAAGAAGAAGAAAT
TTATATATATTGTATATGTAATACTTTTAATCCTGACAAAAACTCTGAGAGGAAATCGAA
GCACAGAGACGTTAAGGAACAGGTGGAAGTTCACACAGTAGTGGTAGAGTCAGAATTTGA
ACCCGGGCAATCTGGCTCCATACCCTTAACCACAAGACAGTTTAAAAACTGAGTACTGAC
TTCAGATTTGTCCGTTTCAGGGTATGTAAATCTTGCCCTCCTCACCTGCACAAAAAAAGA
ACTAGGGAAACAAATACTGAACTTGAGTGAATGATAAACGTGGTACAGGATTTAGCAGTA
AAAGCTACTAATGTTTGCTACTTTGAAAGGTGTCAAAAAATTAGATGGATCGATAGATAT
GTGATATGCAAATGTAGAAAAATGTTAATTATGGAATTCCCTGGTGGTTCAGCAGGTTAA
GGATCCAGTGTCGTCACTGCTGCGGCTCAGGTCACAGCTGTGGTGTGGGTTCGATCCCTG
GCTTCGGAACTTCCACCTGCTGAG------------GAAAGAAAAAAAGGAAGAAAGAAA
GAAAAATGTTGATTGTAGAATCTAGGTGGTAGGGATAGGTTCACTGTACACTTTTTCAAT
ATTTTCTATGTTTGAACGTTTTAATAAAACATTTTGAAAAACTGAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               77-189, + strand, RNAz p=0.741044

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-189, + strand, RNAz p=0.741044

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               61-189, - strand, RNAmicro p=0.997056

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               61-189, - strand, RNAmicro p=0.997056

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK095821, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK095821, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               6-867, gnl|bosTau2|chr23 (23248435-23249280)
               

               
               6-867, gnl|Hg17|chr6 (31658216-31659012)
               

               
               6-867, gnl|Mm7|chr17 (33290897-33289975)
               


               
               913-1297, gnl|bosTau2|chr23 (23249985-23250375)
               

               
               913-1297, gnl|Hg17|chr6 (31659780-31661048)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-867, gnl|bosTau2|chr23 (23248435-23249280)
               

               
               6-867, gnl|Hg17|chr6 (31658216-31659012)
               

               
               6-867, gnl|Mm7|chr17 (33290897-33289975)
               


               
               913-1297, gnl|bosTau2|chr23 (23249985-23250375)
               

               
               913-1297, gnl|Hg17|chr6 (31659780-31661048)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               elu (0.385356)
               

               
               thg (0.126791)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               thg (0.126791)

	6-867, gnl\|bosTau2\|chr23 (23248435-23249280)
	6-867, gnl\|Hg17\|chr6 (31658216-31659012)
	6-867, gnl\|Mm7\|chr17 (33290897-33289975)

	913-1297, gnl\|bosTau2\|chr23 (23249985-23250375)
	913-1297, gnl\|Hg17\|chr6 (31659780-31661048)