Non-Coding RNA Search

Ss1.1-rthg14_b20.5

Sequence:


               
               CATTGCACCACAGCAGAAACTCCTTCATTGCTTTTTTGGTTACTCGATCTCCATTTCCAT
CTGATGCCCCCTTTTTTTCCCACTTGAAAAATTTTCAAGATAATTGTATATTCACATCAA
AGACTTTTGATAAATACACTTTTCCCACAAGTAATTAAACTTTTCGCATAGTTGAGCAGC
CTGAACCAGTAACATGTAAAGTGGGCTGAGAGTGTGACTGGGGCTAGTAGGGTTTTGAAA
GAGTGGTAGCACTGCCCTTGTGTGCTCCCTTTCACCCTGACTCCTTGCCAGGCCAGGCAG
TAACCCTGGTGTGTTTGCCACAAGCTCTAATCACATTGACCTCCCAATGCCGTGAAGTTA
GTGTAATGGACGGACTGCCAGAGGGACTACTTGCTGCTTAGAATCGCTCCCTGTTTGTGA
GTCTTAGAAACCTGTTAAGAGAAGTTCCAGTCAATGTTTGTGTTCTGATGTAAATCTGAG
GAACATTTTAACGCATTCTTTTCTTCATTCAGCTTTTGAGTCCCATGGGTTAGTGGTGAC
ATGTGCAAAGGGTTAGCTGTGGAGATCTGAGCTATTACTACTTCTGCAAGTTGTATTAGT
GCATATCACTAGCACTGCTCTGAAAGGCTGGAAAATGAATGCATAAATGAACTGATGCAT
TTTTTGGCTCAAAAAAAGTCAGGCATAGTAATATTCCTTTTAATATTCCTTTCAGTTCTT
GTTCAGGTGTTGGAATTTTGCCTTTTGGATGCAGTAGAGTTCTAAATTAAGGAATAGTCT
CATGTTGGAAGAGCAATTGAAGCATTTTTGCATTAGCTAAGTTCTGCCTCTTTCAGTACT
AATTCATGCTACTTTTGTCTTCTACTGTGAACGGTAGCTTTTAAACTGAATTGAGACAAG
TTTTTAAAAGACATGTTCATTTAGAGGTCTCCCTTTGTGGTTAAATTAGACTTTAGGATG
ATTCTCACTCAGGTCTGTTGATGGTGCTAGTGCACCCAGCATGATATTGCTGAGCAGAGC
CGAGGGGCTGAAGCTCCTCCATGTATAAGTAGGCAATAGCAGCCTTCTAAGAACCACAGT
AATCAGGCAAAATGTTCTCAAAATTGGGAGGAATGAAATCAATGAGTGTATCTAAGGAGT
GCTCTTTATACAATTGCAAAGAACAAAACAATCATCACTAAGGTATCTGATTGCATGCAG
ATTATTTAGGAGTTTGAAAAGGGACTATTAATGAAATGTTTCTTTTCCCTCTTCCTCCTT
TCTCCCTTCCCTGCCACTGATTCAGTGAGCTGGAGATTGGACAACAGGTATAATTCAAGC
TTTTCATTTAGATTGATAGATTTCCTTGACAGTCATTAAAAAAAAAAGAGCATGTGAACT
AGATTTATAAATGTATTTACAAATGATGCTTTCAAGAGTTGTGCCTCTTAAATATTAGTA
GCGACATGGTTTCGTTTTCAAAACTTGGAATTAACTTGTTTTTTTGTCTCATTCCTAACT
TGAATGTTTGTGAGTTTTATTTCTTAGTGCTTACATTGTGTTATGATCATACAGACTTAA
CATGGTCTAGGTTACTAATGTTTGTTCTGCATGAGTGTCATTAATTTTGGAGTTTGTTGA
AGACTTTGAACTTTAAAGAGTTTTAAAGGCAGTTGCTAACTAAATTTTTCTTTTTCTTTG
ATTCACAGAAGGAGTAAAGATTCTGCAGTGACTGTGTCTGTGGTGATTGTGCAAAATTTT
CATGAGGGGCCCAATAAACTAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTGCACCACAGCAGAAACTCCTTCATTGCTTTTTTGGTTACTCGATCTCCATTTCCAT
CTGATGCCCCCTTTTTTTCCCACTTGAAAAATTTTCAAGATAATTGTATATTCACATCAA
AGACTTTTGATAAATACACTTTTCCCACAAGTAATTAAACTTTTCGCATAGTTGAGCAGC
CTGAACCAGTAACATGTAAAGTGGGCTGAGAGTGTGACTGGGGCTAGTAGGGTTTTGAAA
GAGTGGTAGCACTGCCCTTGTGTGCTCCCTTTCACCCTGACTCCTTGCCAGGCCAGGCAG
TAACCCTGGTGTGTTTGCCACAAGCTCTAATCACATTGACCTCCCAATGCCGTGAAGTTA
GTGTAATGGACGGACTGCCAGAGGGACTACTTGCTGCTTAGAATCGCTCCCTGTTTGTGA
GTCTTAGAAACCTGTTAAGAGAAGTTCCAGTCAATGTTTGTGTTCTGATGTAAATCTGAG
GAACATTTTAACGCATTCTTTTCTTCATTCAGCTTTTGAGTCCCATGGGTTAGTGGTGAC
ATGTGCAAAGGGTTAGCTGTGGAGATCTGAGCTATTACTACTTCTGCAAGTTGTATTAGT
GCATATCACTAGCACTGCTCTGAAAGGCTGGAAAATGAATGCATAAATGAACTGATGCAT
TTTTTGGCTCAAAAAAAGTCAGGCATAGTAATATTCCTTTTAATATTCCTTTCAGTTCTT
GTTCAGGTGTTGGAATTTTGCCTTTTGGATGCAGTAGAGTTCTAAATTAAGGAATAGTCT
CATGTTGGAAGAGCAATTGAAGCATTTTTGCATTAGCTAAGTTCTGCCTCTTTCAGTACT
AATTCATGCTACTTTTGTCTTCTACTGTGAACGGTAGCTTTTAAACTGAATTGAGACAAG
TTTTTAAAAGACATGTTCATTTAGAGGTCTCCCTTTGTGGTTAAATTAGACTTTAGGATG
ATTCTCACTCAGGTCTGTTGATGGTGCTAGTGCACCCAGCATGATATTGCTGAGCAGAGC
CGAGGGGCTGAAGCTCCTCCATGTATAAGTAGGCAATAGCAGCCTTCTAAGAACCACAGT
AATCAGGCAAAATGTTCTCAAAATTGGGAGGAATGAAATCAATGAGTGTATCTAAGGAGT
GCTCTTTATACAATTGCAAAGAACAAAACAATCATCACTAAGGTATCTGATTGCATGCAG
ATTATTTAGGAGTTTGAAAAGGGACTATTAATGAAATGTTTCTTTTCCCTCTTCCTCCTT
TCTCCCTTCCCTGCCACTGATTCAGTGAGCTGGAGATTGGACAACAGGTATAATTCAAGC
TTTTCATTTAGATTGATAGATTTCCTTGACAGTCATTAAAAAAAAAAGAGCATGTGAACT
AGATTTATAAATGTATTTACAAATGATGCTTTCAAGAGTTGTGCCTCTTAAATATTAGTA
GCGACATGGTTTCGTTTTCAAAACTTGGAATTAACTTGTTTTTTTGTCTCATTCCTAACT
TGAATGTTTGTGAGTTTTATTTCTTAGTGCTTACATTGTGTTATGATCATACAGACTTAA
CATGGTCTAGGTTACTAATGTTTGTTCTGCATGAGTGTCATTAATTTTGGAGTTTGTTGA
AGACTTTGAACTTTAAAGAGTTTTAAAGGCAGTTGCTAACTAAATTTTTCTTTTTCTTTG
ATTCACAGAAGGAGTAAAGATTCTGCAGTGACTGTGTCTGTGGTGATTGTGCAAAATTTT
CATGAGGGGCCCAATAAACTAAGA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               40-556, gnl|bosTau2|chr28 (26692227-26692736)
               

               
               40-556, gnl|Hg17|chr10 (79468272-79469112)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-556, gnl|bosTau2|chr28 (26692227-26692736)
               

               
               40-556, gnl|Hg17|chr10 (79468272-79469112)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               thg (0.380373)
               

               
               sin (0.349895)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ese (0.126502)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               thg (0.380373)
               

               
               sin (0.349895)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ese (0.126502)

	40-556, gnl\|bosTau2\|chr28 (26692227-26692736)
	40-556, gnl\|Hg17\|chr10 (79468272-79469112)

	lin (0.436808)
	amn (0.417711)
	elu (0.385356)
	thg (0.380373)
	sin (0.349895)
	liv (0.292569)
	spl (0.286369)
	lyg (0.266205)
	ret (0.257467)
	cbe (0.239234)
	mgp (0.230681)
	cty (0.20816)
	sag (0.182715)
	mgm (0.180343)
	fhi (0.169578)
	ski (0.146735)
	lnt (0.142308)
	pla (0.133672)
	ese (0.126502)