Non-Coding RNA Search

Ss1.1-rthg14_c10.5

Sequence:


               
               CATTAATTATTAGAGTATCTTCTCTCCCCCCCCCCGCCCCGGCCTTGTCTCCTTTCTCTC
TCACTCTCTTTTTTAATTGTTTGGCTTTCTCAGGCAGTATTGCTCCTTCTGGCATGTCAA
GTGCCACATAAAAGAAAAATCTGTCGTTTGGTTCTGGCATTTTGTTCCCACCATTCACTT
CTTATTGACTTCACATCTACTTGCCATCCTGCAGTAGTATAAGTCGTGAATAAAATAATT
TGATGTTTTTGGAGTACATTAGGAGAACTAATGAGTTTTATTTCCTATCATGCCCATCAT
ATCTGTGTTAAGATATAGGTATAAGGATAGAAATGACTGTGTTTGGGGTCTTTTTTTATT
AGTATTGATAATGCAGGAAGGTTTTCACAAAAATGAGTAAAATAATGAAACTTGTATCTA
GAGCACTTAATGGTCTCTGTTTTCAATTTGATTTTTGATTTCATTTTTCTCAGAGTTATA
TTGGGTTTCTATAGCTGTTACTAAATTACTTTACAGAAACTGGCTGGTTTATTTCTGGTG
GAAAGCTACAGTGTCTCTTGAGTTGCAGATTTGAACATTCTTTGTAAATAGCTGTCTGGA
TGGATTATGATACAGAAGATGCTACCAATGAAATAGAAAAATGAACTAGATGATATAAGA
CTATGAGCCTCATGACCACTCTAGAAGGCACCTGTACACATCAGTCATAAAGACCATAAT
CATTGAATGCAGTGCCAATGCCCCAATTTTATGCCTGTGACTCAACAAAGGTCTGAAAAG
TTTATAGAAGCAGTTTGGGATTGGTATTTACAACTTCCTTGATGGTTACCTGCATGTCCA
TTGCTGGCAACGGACTTTGTCATTAAAACCTGACCTCCTAGGTTAAGGGAGCTACACTGT
GGTGTATCCTTTACTTACTTGGATAAACTAACTTGTAATAGAAATATACTTTAATTCTGA
AATGTGTAATTTTTGAATAATCTCTGTCTTTGAGAGCAATACAGAATTGTGATTTATTAA
TTTTAAATTAAAATATTCAGATCTTGTTGCAAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTAATTATTAGAGTATCTTCTCTCCCCCCCCCCGCCCCGGCCTTGTCTCCTTTCTCTC
TCACTCTCTTTTTTAATTGTTTGGCTTTCTCAGGCAGTATTGCTCCTTCTGGCATGTCAA
GTGCCACATAAAAGAAAAATCTGTCGTTTGGTTCTGGCATTTTGTTCCCACCATTCACTT
CTTATTGACTTCACATCTACTTGCCATCCTGCAGTAGTATAAGTCGTGAATAAAATAATT
TGATGTTTTTGGAGTACATTAGGAGAACTAATGAGTTTTATTTCCTATCATGCCCATCAT
ATCTGTGTTAAGATATAGGTATAAGGATAGAAATGACTGTGTTTGGGGTCTTTTTTTATT
AGTATTGATAATGCAGGAAGGTTTTCACAAAAATGAGTAAAATAATGAAACTTGTATCTA
GAGCACTTAATGGTCTCTGTTTTCAATTTGATTTTTGATTTCATTTTTCTCAGAGTTATA
TTGGGTTTCTATAGCTGTTACTAAATTACTTTACAGAAACTGGCTGGTTTATTTCTGGTG
GAAAGCTACAGTGTCTCTTGAGTTGCAGATTTGAACATTCTTTGTAAATAGCTGTCTGGA
TGGATTATGATACAGAAGATGCTACCAATGAAATAGAAAAATGAACTAGATGATATAAGA
CTATGAGCCTCATGACCACTCTAGAAGGCACCTGTACACATCAGTCATAAAGACCATAAT
CATTGAATGCAGTGCCAATGCCCCAATTTTATGCCTGTGACTCAACAAAGGTCTGAAAAG
TTTATAGAAGCAGTTTGGGATTGGTATTTACAACTTCCTTGATGGTTACCTGCATGTCCA
TTGCTGGCAACGGACTTTGTCATTAAAACCTGACCTCCTAGGTTAAGGGAGCTACACTGT
GGTGTATCCTTTACTTACTTGGATAAACTAACTTGTAATAGAAATATACTTTAATTCTGA
AATGTGTAATTTTTGAATAATCTCTGTCTTTGAGAGCAATACAGAATTGTGATTTATTAA
TTTTAAATTAAAATATTCAGATCTTGTTGCAAGAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1056, gnl|bosTau2|chr1 (42993611-42992565)
               

               
               1-1056, gnl|Hg17|chr3 (198045050-198046039)
               

               
               1-1056, gnl|Mm7|chr16 (31693318-31692389)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1056, gnl|bosTau2|chr1 (42993611-42992565)
               

               
               1-1056, gnl|Hg17|chr3 (198045050-198046039)
               

               
               1-1056, gnl|Mm7|chr16 (31693318-31692389)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               cbl (0.918379)
               

               
               lyg (0.665513)
               

               
               thg (0.633955)
               

               
               isp (0.451128)
               

               
               mga (0.32041)
               

               
               ski (0.29347)
               

               
               kid (0.259471)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               med (0.116252)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.918379)
               

               
               lyg (0.665513)
               

               
               thg (0.633955)
               

               
               isp (0.451128)
               

               
               mga (0.32041)
               

               
               ski (0.29347)
               

               
               kid (0.259471)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               med (0.116252)

	1-1056, gnl\|bosTau2\|chr1 (42993611-42992565)
	1-1056, gnl\|Hg17\|chr3 (198045050-198046039)
	1-1056, gnl\|Mm7\|chr16 (31693318-31692389)

	cbl (0.918379)
	lyg (0.665513)
	thg (0.633955)
	isp (0.451128)
	mga (0.32041)
	ski (0.29347)
	kid (0.259471)
	gul (0.177588)
	fbs (0.175346)
	sin (0.174948)
	tbr (0.154178)
	lun (0.150489)
	bfe (0.149858)
	liv (0.146284)
	ret (0.128733)
	med (0.116252)