Non-Coding RNA Search

Ss1.1-rthg14_h23.5

Sequence:


               
               AGTACACTTTGATGAATATTCAGGAGAATCATTTTATCGTGAAAAATCCCAAGAAGTCTT
AAAGTTGCTGGACAGTAAAGGACTCCTACAGAAAACAATAAAAGGCACTGCTGTTGTGGA
TCTCTCAGGAAATGGTGACCCCTCCTCAGTTTGTACCGTAATGCGAAGCGACGGGACTTC
TCTCTATGCAACCAGAGATATTGCAGCTGCTATAGATCGAATGGAAAAGTATAATTTTGA
TGAAATGATTTATGTGACAGATAAGGGGCAAAAAAAGCATTTTCAGCAAGTATTCCAAAT
GCTGCACATCATGGGCTATGACTGGGCAGAAAGATGCCTGCATGTGCCCTTTGGGGTGGT
GCAGGGAATGAAGACACGAAGAGGAGATGTTACTTTTCTGGAAGATGTTTTAAATGAGAT
TCGATTGAGGATGCTGCAGAACATGGCTTCTATTAAAACTACCAAAGAACTGGAGAACCC
ACAGGAGACAGCAGAGAGGGTCGGGCTCGCAGCCCTCATTATTCAGGACTTCAGAGGTTT
ACTGTTATCTGACTATCAGTTCAGCTGGGACCGAGTTTTCCAGAGTCGAGGGGACACAGG
AGTCTTCCTACAGTATACACACGCCCGCCTCCACAGTTTGGAAGAGACTTTTGGATGTGG
TTATCTAAATGACTTCAACACTGCTTGCTTACAAGAGCCACAGTCGGTTTCCATTCTCCA
GCATCTTCTCAGGTTCGATGAGGTGCTTTATAGGTCATCTCAGGACCTTCAACCCAGGCA
TATCGTCAGTTACCTTCTAACTCTAAGTCATCTTGCAGCTGTGGCACACAAAACACTGCA
CATAAGAAACAGTCCTCCTGAAGTGGCCGGGGCCAGACTTCATCTTTTCAGAGCTGTCCG
CTCTGTCCTTGCCAATGGAATGAAACTTCTTGGAATAACACCTGTATGTAGGATGTAATA
TCTAGTTAAAATTGCTTTTAAAATACTAGATATATTCTAGTTATCTGTTCTTATATGTCT
TGCTGTTTAGAATAGAATTGCAACTATTATTCTGTGTCAGAATCTATATTTTGTCATCTA
TATTTTATTAAGTGATTTATCAACTTATTAAATCTTTATCTTTTAAAAAATAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTACACTTTGATGAATATTCAGGAGAATCATTTTATCGTGAAAAATCCCAAGAAGTCTT
AAAGTTGCTGGACAGTAAAGGACTCCTACAGAAAACAATAAAAGGCACTGCTGTTGTGGA
TCTCTCAGGAAATGGTGACCCCTCCTCAGTTTGTACCGTAATGCGAAGCGACGGGACTTC
TCTCTATGCAACCAGAGATATTGCAGCTGCTATAGATCGAATGGAAAAGTATAATTTTGA
TGAAATGATTTATGTGACAGATAAGGGGCAAAAAAAGCATTTTCAGCAAGTATTCCAAAT
GCTGCACATCATGGGCTATGACTGGGCAGAAAGATGCCTGCATGTGCCCTTTGGGGTGGT
GCAGGGAATGAAGACACGAAGAGGAGATGTTACTTTTCTGGAAGATGTTTTAAATGAGAT
TCGATTGAGGATGCTGCAGAACATGGCTTCTATTAAAACTACCAAAGAACTGGAGAACCC
ACAGGAGACAGCAGAGAGGGTCGGGCTCGCAGCCCTCATTATTCAGGACTTCAGAGGTTT
ACTGTTATCTGACTATCAGTTCAGCTGGGACCGAGTTTTCCAGAGTCGAGGGGACACAGG
AGTCTTCCTACAGTATACACACGCCCGCCTCCACAGTTTGGAAGAGACTTTTGGATGTGG
TTATCTAAATGACTTCAACACTGCTTGCTTACAAGAGCCACAGTCGGTTTCCATTCTCCA
GCATCTTCTCAGGTTCGATGAGGTGCTTTATAGGTCATCTCAGGACCTTCAACCCAGGCA
TATCGTCAGTTACCTTCTAACTCTAAGTCATCTTGCAGCTGTGGCACACAAAACACTGCA
CATAAGAAACAGTCCTCCTGAAGTGGCCGGGGCCAGACTTCATCTTTTCAGAGCTGTCCG
CTCTGTCCTTGCCAATGGAATGAAACTTCTTGGAATAACACCTGTATGTAGGATGTAATA
TCTAGTTAAAATTGCTTTTAAAATACTAGATATATTCTAGTTATCTGTTCTTATATGTCT
TGCTGTTTAGAATAGAATTGCAACTATTATTCTGTGTCAGAATCTATATTTTGTCATCTA
TATTTTATTAAGTGATTTATCAACTTATTAAATCTTTATCTTTTAAAAAATAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55728733|emb|CAH91106.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55728733|emb|CAH91106.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               857-984, gnl|bosTau2|chr21 (41308438-41308311)
               

               
               857-984, gnl|Hg17|chr6 (88280937-88280825)
               

               
               857-984, gnl|Mm7|chr4 (34798662-34798772)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               857-984, gnl|bosTau2|chr21 (41308438-41308311)
               

               
               857-984, gnl|Hg17|chr6 (88280937-88280825)
               

               
               857-984, gnl|Mm7|chr4 (34798662-34798772)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               cte (0.58548)
               

               
               cbe (0.478469)
               

               
               sug (0.381874)
               

               
               ova (0.258264)
               

               
               mgp (0.230681)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               cbe (0.478469)
               

               
               sug (0.381874)
               

               
               ova (0.258264)
               

               
               mgp (0.230681)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	857-984, gnl\|bosTau2\|chr21 (41308438-41308311)
	857-984, gnl\|Hg17\|chr6 (88280937-88280825)
	857-984, gnl\|Mm7\|chr4 (34798662-34798772)

	cte (0.58548)
	cbe (0.478469)
	sug (0.381874)
	ova (0.258264)
	mgp (0.230681)
	cmu (0.186393)
	sag (0.182715)
	sto (0.179824)
	cut (0.169924)
	cki (0.165235)
	mga (0.160205)
	isp (0.150376)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	csk (0.140746)
	ssp (0.13552)
	ute (0.132784)
	thg (0.126791)
	spc (0.113366)
	cty (0.10408)