Non-Coding RNA Search

Ss1.1-rthg14_k23.5

Sequence:


               
               TGTGCCAAACCTCCACGGCTGCTACGACACCTGTGACTCTCACTACTCCATTCAATATAA
CGTCCTCTGTATCGTCTGGGACTATGTCAAACCCAGTCACAGTGGCAGCTGCAATGAGCA
TGAGAAGTCCAGTCAATGTTTCAAGTGCAGTTAACATAACCAGCCCAATGAACATAGGGC
ACCCTGTAACTATAACCAGTCCATTATCCATGACCTCTCCCTTAACACTCACCACCCCAG
TCAACCTCCCCACCCCCGTCACTGCCCCAGTGAATATAGCACACCCTGTCACCATCACGT
CTCCAATGAACCTGCCCACGCCTATGACATTAGCGGCCCCTCTCAATATAGCAATGAGGC
CTGTAGAGAGCATGCCTTTCTTGCCCCAAGCTTTGCCTACATCACCACCTTGGTAAACAG
TATTATAAAATCAAAATATGGGTTAAAGTAAATATTTACCAGCAACTTACTTTTAGTTTA
TTAAAGCAAAAAGTAAACCAAGGGAGATTTTATTATGTTAGTTAATAATAGTGTAGCAGC
ATTTTTCTCCAATTTGGCTGGGATTGTTCAAAGTAGGGTGTGTATGTCACTTATCACTGG
ACCACTTTAGTTAAACCAGAATTCCTTTTAGCTGACCGCATTGCTTAAACAGGATAGTAG
TTGGCAAGATGAAATGCCAGAATTAGAACCAATCATAAAGAAGCAAAACCCATTTCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGCCAAACCTCCACGGCTGCTACGACACCTGTGACTCTCACTACTCCATTCAATATAA
CGTCCTCTGTATCGTCTGGGACTATGTCAAACCCAGTCACAGTGGCAGCTGCAATGAGCA
TGAGAAGTCCAGTCAATGTTTCAAGTGCAGTTAACATAACCAGCCCAATGAACATAGGGC
ACCCTGTAACTATAACCAGTCCATTATCCATGACCTCTCCCTTAACACTCACCACCCCAG
TCAACCTCCCCACCCCCGTCACTGCCCCAGTGAATATAGCACACCCTGTCACCATCACGT
CTCCAATGAACCTGCCCACGCCTATGACATTAGCGGCCCCTCTCAATATAGCAATGAGGC
CTGTAGAGAGCATGCCTTTCTTGCCCCAAGCTTTGCCTACATCACCACCTTGGTAAACAG
TATTATAAAATCAAAATATGGGTTAAAGTAAATATTTACCAGCAACTTACTTTTAGTTTA
TTAAAGCAAAAAGTAAACCAAGGGAGATTTTATTATGTTAGTTAATAATAGTGTAGCAGC
ATTTTTCTCCAATTTGGCTGGGATTGTTCAAAGTAGGGTGTGTATGTCACTTATCACTGG
ACCACTTTAGTTAAACCAGAATTCCTTTTAGCTGACCGCATTGCTTAAACAGGATAGTAG
TTGGCAAGATGAAATGCCAGAATTAGAACCAATCATAAAGAAGCAAAACCCATTTCAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.913355

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.913355

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               31-158, - strand, RNAmicro p=0.920911

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               31-158, - strand, RNAmicro p=0.920911

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-720, gnl|bosTau2|chr19 (4204534-4203813)
               

               
               1-720, gnl|Hg17|chr17 (53407248-53406525)
               

               
               1-720, gnl|Mm7|chr11 (88151318-88152027)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr19 (4204534-4203813)
               

               
               1-720, gnl|Hg17|chr17 (53407248-53406525)
               

               
               1-720, gnl|Mm7|chr11 (88151318-88152027)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cbl (0.229595)
               

               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

	1-720, gnl\|bosTau2\|chr19 (4204534-4203813)
	1-720, gnl\|Hg17\|chr17 (53407248-53406525)
	1-720, gnl\|Mm7\|chr11 (88151318-88152027)

	cbl (0.229595)
	rec (0.17307)
	liv (0.146284)
	nmm (0.132802)
	ret (0.128733)
	thg (0.126791)
	pgl (0.118483)