Non-Coding RNA Search

Ss1.1-rthg14_m21.5

Sequence:


               
               TGAATGAAACCGTGAAGGCCCCAGACATAGAATGTGTTTTGAGATGCAGTGTTTTGGAAA
TAGAGCAAAGTATGAACAGAGTAAAAAATATTCCAGATGCTGATGTCCACAATGCGATGG
ACAATTATGAATGTAATCTCTATACCTTTCTGTATTTGGTGTGCATCTCCACCAAAACCC
AGTGCAGTGAAGAAGATCAGTGCAAAATTAACAAGCAGATCTACAACCTGATTCACCTCG
ATCCCAGAACTCGTGAAGGTTTCACCTTGCTGCATCTAGCTGTCAACTCAAACACCCCTG
TTGATGATTTCCACACCAATGACGTCTGCAGCTTTCCAAACGCGCTTGTCACGAAGCTCC
TGCTGGACTGTGGTGCTGAGGTGAATGCTGTGGACAATGAAGGGAACAGTGCCCTTCACA
TTATCGTTCAGTACAACAGGCCCATCAGTGACTTTTTGACCTTGCACTCTATCATCATTA
GTCTAGTTGAAGCTGGCGCTCACACCGACATGACAAATAAGCAGAATAAGACTCCACTAG
ACAAAAGTACAACTGGGGTGTCAGAAATACTACTTAAAACTCAAATGAAGATGAGTCTCA
AGTGCCTGGCTGCCCGGGCAGTTCGGGCTAATGACATTAACTACCAAGACCAGATCCCCA
GAACTCTTGAAGAGTTTGTTGGATTTCATTAAGTGACTGGATATGTAAAATCGTTTAATG
TGGTGCTAAAAAGTAAAGGACTTTAATCACAGACAATAGAATTATGTGTTCATAAATTCT
ACTTTTCTTTCCACTACTCTTCCTCCCTACCCAGCCTTCCTTAGTTTTGTATGTGGTCTT
CTTGCCTCATATGGTAATTGATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAATGAAACCGTGAAGGCCCCAGACATAGAATGTGTTTTGAGATGCAGTGTTTTGGAAA
TAGAGCAAAGTATGAACAGAGTAAAAAATATTCCAGATGCTGATGTCCACAATGCGATGG
ACAATTATGAATGTAATCTCTATACCTTTCTGTATTTGGTGTGCATCTCCACCAAAACCC
AGTGCAGTGAAGAAGATCAGTGCAAAATTAACAAGCAGATCTACAACCTGATTCACCTCG
ATCCCAGAACTCGTGAAGGTTTCACCTTGCTGCATCTAGCTGTCAACTCAAACACCCCTG
TTGATGATTTCCACACCAATGACGTCTGCAGCTTTCCAAACGCGCTTGTCACGAAGCTCC
TGCTGGACTGTGGTGCTGAGGTGAATGCTGTGGACAATGAAGGGAACAGTGCCCTTCACA
TTATCGTTCAGTACAACAGGCCCATCAGTGACTTTTTGACCTTGCACTCTATCATCATTA
GTCTAGTTGAAGCTGGCGCTCACACCGACATGACAAATAAGCAGAATAAGACTCCACTAG
ACAAAAGTACAACTGGGGTGTCAGAAATACTACTTAAAACTCAAATGAAGATGAGTCTCA
AGTGCCTGGCTGCCCGGGCAGTTCGGGCTAATGACATTAACTACCAAGACCAGATCCCCA
GAACTCTTGAAGAGTTTGTTGGATTTCATTAAGTGACTGGATATGTAAAATCGTTTAATG
TGGTGCTAAAAAGTAAAGGACTTTAATCACAGACAATAGAATTATGTGTTCATAAATTCT
ACTTTTCTTTCCACTACTCTTCCTCCCTACCCAGCCTTCCTTAGTTTTGTATGTGGTCTT
CTTGCCTCATATGGTAATTGATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|48526632|gb|AAT45515.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|48526632|gb|AAT45515.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               82-201, - strand, RNAz p=0.788462
               

               
               522-681, - strand, RNAz p=0.979832

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-201, - strand, RNAz p=0.788462
               

               
               522-681, - strand, RNAz p=0.979832

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-864, gnl|bosTau2|chr10 (9837484-9836622)
               

               
               3-864, gnl|Hg17|chr15 (66369945-66370805)
               

               
               3-864, gnl|Mm7|chr9 (62825137-62824287)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-864, gnl|bosTau2|chr10 (9837484-9836622)
               

               
               3-864, gnl|Hg17|chr15 (66369945-66370805)
               

               
               3-864, gnl|Mm7|chr9 (62825137-62824287)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fat (0.147427)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)

	82-201, - strand, RNAz p=0.788462
	522-681, - strand, RNAz p=0.979832

	3-864, gnl\|bosTau2\|chr10 (9837484-9836622)
	3-864, gnl\|Hg17\|chr15 (66369945-66370805)
	3-864, gnl\|Mm7\|chr9 (62825137-62824287)