Non-Coding RNA Search

Ss1.1-rthg14_n14.5

Sequence:


               
               AATTCATTTTGAAGGTGTAAAACTGTGCTCTGTGTCCGCCACTTGTAGCTGAACGGATAC
TTAAATTTTGACAAAAGAGAAAATACAGACTGAAATACTGAGTATTCTCAGTTTTGCAAG
TGTGATATGGATTTCCTTTTCTGCATATAATAGAAAAATTGAAGAATTCTCAAAGATAGT
GAAATCCCTAGCCTTTCCAAGCTGTATATTTACCTGTCATCTCCTTCTCCATAAATTACT
TCCTTTCAGTAATGACTTTCCCGACCTCTCCCTCCCCCCAACCTCCCATCCCCCCAATAG
GTGGAAAATAAAACAGGTTGATTATGTAGGTCCTCACTGTTAGTGATTGTAAAGTAATTG
TTGTCAATACATAGGTTGCAGCTGAAGTGTTGGAAAGATATAACTTACAAAAGCATTTTT
GGTTTGTGTCAGTTGACAGCTTCCTTTAAGCTGTGTCACTGAAGCTAAGGTTATTAGTGA
TATGTTTAAATTTTTTATTAATATTTAATTTGTTATATATTCTTAATTGTGTGTTTCTTA
GAGGTTTGCACATGTTTTCATTTTTATTTCGTTTACTTAATTGTGCAGGTTGTAAAATAG
ATTGGCGCATTTTCATTCTAAGAACACTTTTCTCCTTAAAACTACTCTGCAGAGATAACT
ATTTTTAGGGGAAGTGGTTTTTTTTTACAGGCACTAAATTGTATTTGTTATTTTTGTACA
CACATAACTAGGGTGGTCAGGGCACCAAGCTTGTAAGGAAAACTTAACTTTTCTTTCATT
TGAACTTTTCCTATACATTACAACTTAAAATTATCTAGAAACAGCATCATGAAATCTAGG
TTGAGAGAGAATACAGTATACATGGGACTACTTCAGGTTTTAGTAGAATCATTTCTGAGG
ACAAAACCTGAAGAATACTGCCAGTGCCGTAAACGGAAGCGTGAGGCCGAGTTCACACTG
GCCACGTGCTGTGGAGGACGAGTAAAGACAGGCTCCTGCTCTTATGGAGACAGACAGCTT
CCCGCTATATCAGAGTAGCTGAAAGAGGGAAAAATGGTCTGAGACATGAGATGCAACATG
GGCGCTACATTGTAAACTGTGCCGAGATGACTCGAATTGTAATTATTATTGATCACACTT
CATCATTTTTGTTTTAACAGGGGATACTGAATGTTAGAAAATCTGCAATATGTTTTAATT
GAGAGATGTAAATAATGTATACAGACTTCTATGTGATGGCATTGGAAATATTTAAATTCT
AGGGTTTTTTTTAAAGGGAGAAACAATGTTTATTTAAAAAAATAATAAATAGTTTCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCATTTTGAAGGTGTAAAACTGTGCTCTGTGTCCGCCACTTGTAGCTGAACGGATAC
TTAAATTTTGACAAAAGAGAAAATACAGACTGAAATACTGAGTATTCTCAGTTTTGCAAG
TGTGATATGGATTTCCTTTTCTGCATATAATAGAAAAATTGAAGAATTCTCAAAGATAGT
GAAATCCCTAGCCTTTCCAAGCTGTATATTTACCTGTCATCTCCTTCTCCATAAATTACT
TCCTTTCAGTAATGACTTTCCCGACCTCTCCCTCCCCCCAACCTCCCATCCCCCCAATAG
GTGGAAAATAAAACAGGTTGATTATGTAGGTCCTCACTGTTAGTGATTGTAAAGTAATTG
TTGTCAATACATAGGTTGCAGCTGAAGTGTTGGAAAGATATAACTTACAAAAGCATTTTT
GGTTTGTGTCAGTTGACAGCTTCCTTTAAGCTGTGTCACTGAAGCTAAGGTTATTAGTGA
TATGTTTAAATTTTTTATTAATATTTAATTTGTTATATATTCTTAATTGTGTGTTTCTTA
GAGGTTTGCACATGTTTTCATTTTTATTTCGTTTACTTAATTGTGCAGGTTGTAAAATAG
ATTGGCGCATTTTCATTCTAAGAACACTTTTCTCCTTAAAACTACTCTGCAGAGATAACT
ATTTTTAGGGGAAGTGGTTTTTTTTTACAGGCACTAAATTGTATTTGTTATTTTTGTACA
CACATAACTAGGGTGGTCAGGGCACCAAGCTTGTAAGGAAAACTTAACTTTTCTTTCATT
TGAACTTTTCCTATACATTACAACTTAAAATTATCTAGAAACAGCATCATGAAATCTAGG
TTGAGAGAGAATACAGTATACATGGGACTACTTCAGGTTTTAGTAGAATCATTTCTGAGG
ACAAAACCTGAAGAATACTGCCAGTGCCGTAAACGGAAGCGTGAGGCCGAGTTCACACTG
GCCACGTGCTGTGGAGGACGAGTAAAGACAGGCTCCTGCTCTTATGGAGACAGACAGCTT
CCCGCTATATCAGAGTAGCTGAAAGAGGGAAAAATGGTCTGAGACATGAGATGCAACATG
GGCGCTACATTGTAAACTGTGCCGAGATGACTCGAATTGTAATTATTATTGATCACACTT
CATCATTTTTGTTTTAACAGGGGATACTGAATGTTAGAAAATCTGCAATATGTTTTAATT
GAGAGATGTAAATAATGTATACAGACTTCTATGTGATGGCATTGGAAATATTTAAATTCT
AGGGTTTTTTTTAAAGGGAGAAACAATGTTTATTTAAAAAAATAATAAATAGTTTCATTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               529-643, - strand, RNAz p=0.831325

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               529-643, - strand, RNAz p=0.831325

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               57-1170, gnl|bosTau2|chr6 (48592723-48593817)
               

               
               57-1170, gnl|Hg17|chr4 (72217660-72218753)
               

               
               57-1170, gnl|Mm7|chr5 (88700921-88701922)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               57-1170, gnl|bosTau2|chr6 (48592723-48593817)
               

               
               57-1170, gnl|Hg17|chr4 (72217660-72218753)
               

               
               57-1170, gnl|Mm7|chr5 (88700921-88701922)

Expressed library(ies): 25 entry(ies)

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Expressed library(ies): 25 entry(ies)

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               cmu (0.931966)
               

               
               tra (0.861645)
               

               
               aor (0.585823)
               

               
               cte (0.58548)
               

               
               sto (0.539471)
               

               
               fco (0.471624)
               

               
               liv (0.438853)
               

               
               tbr (0.308356)
               

               
               lin (0.291206)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               nbm (0.198649)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.931966)
               

               
               tra (0.861645)
               

               
               aor (0.585823)
               

               
               cte (0.58548)
               

               
               sto (0.539471)
               

               
               fco (0.471624)
               

               
               liv (0.438853)
               

               
               tbr (0.308356)
               

               
               lin (0.291206)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               nbm (0.198649)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	57-1170, gnl\|bosTau2\|chr6 (48592723-48593817)
	57-1170, gnl\|Hg17\|chr4 (72217660-72218753)
	57-1170, gnl\|Mm7\|chr5 (88700921-88701922)

	cmu (0.931966)
	tra (0.861645)
	aor (0.585823)
	cte (0.58548)
	sto (0.539471)
	fco (0.471624)
	liv (0.438853)
	tbr (0.308356)
	lin (0.291206)
	pgl (0.236967)
	mgp (0.230681)
	nbm (0.198649)
	fbs (0.175346)
	cki (0.165235)
	bfe (0.149858)
	ski (0.146735)
	spl (0.143184)
	lnt (0.142308)
	nmm (0.132802)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	med (0.116252)
	ecc (0.115035)
	spc (0.113366)