Non-Coding RNA Search

Ss1.1-rthg14_n2.5

Sequence:


               
               TTATGAGAAAATGGAGACAGTGAAGACACAAGAACAAGAACAGTCTTACAGTTCTGGTGA
TAGTGATGTTAGCAGATGTTCATCTCCAAGGTCTGTCCTTGGAAAGGATGAACAAATAAA
TAAAGGTCATTGTGATTCTGGTACAAGAATCAAATCAAAGAAGGAAGAGAAACACTCTAC
ATCATTGTCCTCTCCCAGAGACCTGAGCTCATCCATCAGAGGAGACAGAGTATATTCCCC
ATATACCCACAGACACAGAAGGAGGGGAAGATCGAGAAGTTCAGATTCACGCTCCCAGAG
TAGGAGTGGGCATGATCAGAAGAATCGTAGAAAGCATCATGGGAAGAAAAGAATGAAAAG
CAAACGATCCAGAAGCAGGGAGAGTAGCAGACCTAGAGGTAGAAGAGACAAAAAGAGGTC
AAGAACTAGAGATAGCAGTTGGTCTAGAAGAAGCCAGACTCTGTCTCTAAGTAGTGAAAG
CACAAGCAGATCAAGATCTCGTAGCAGTGATCATGGTAAAAGAAGATCACGGAGCAGAAA
TAGAGATCGTTACTATTTAAGAAATAATTACGGAAGCAGATATAAGTGGGAGTATACTTA
CTATAGTAGAAACAAGGACAGGGATGGCTACGAATCATCTTACAGGAGAAGGACTCTGTC
CAGAGCTCATTATTCCAGACAATCTTCAAGTCCAGAGTTTAGAATTAATTCATCCTTTTC
TGAAAGAACAAATGCTAGGAAAAAAAATAATCACAGTGAAAGGAAATACTACTACTATGA
AAGGCATAGATCAAGGAGCCTGTCTAGTACTCGATCAAGGACTGCATCTACAGGGCCTGA
CCGGACAAGAAATGAAAAGCCTGGCGGGAAGCGAAAATACAAAACGCGGCATTTGGAAGG
TGCTAATGAAATGGCTCAGCCATCTCGTGAATTTGCTTCTAAAGTAAAGGAAAGTCATTA
CCAAAAATCTTCATCAAAATTGGATGCAAGCTACAAAAATGAGAGTGACAGCTTTTCAGA
CAGCCGATCATCAGACAGAGAGACAAAACACAAGAGGAGAAGGAGAAGGACCCGGAGCCT
AAGTGTAGAGATAGTTTATGAAGGGAAAGCTACCGATACAGCTAGACATCATAAAAAGAA
AAAGAAGAAACATAAGAAGAAGCATAAGAAACACCATGGCGATAATGCTTCACATTCCCC
AGTTGTGATTACCATTGACAGTGACAGTGATAAGGATTCTGAAGTAAAGGAGGATGTAGA
ATGTGACCCTAGTGGTCCTCAAGACCCTCTGCAAAGTGAATTTTTGGCTTCTTCCTTGGA
ATCATTTGAAACTAAAGATGTAGTTACAATAGAAGATGAATTTGGTGTCCTGAGCAAGGA
GTGTGATTTCACCACACTTAGTAACAACTTGAATAATGCCAACAAAACTGTAGATAATAT
TCCACCCCAGGCAGCTTCAGTTGAACAAACTCTTGATGTGAGAGAAGAGAGCACCTTTGC
CTCTCATTTGGAGAACCAGTCCAGTAATGGCTCGATTCAGACTGAGCTGTCAAGGCAGCT
GCCATCGCCACGGACATCATTAATGTCAGTGTCTCTTGGTAGAGACCATGATATGTCTTA
AAACTGCCAAAGCATCTCATTGAGAATCCTGATGGTATAAAAAGAGGAAAAGACAAGCAA
AAAACAATGTCATCTACTGCAGTCTATTTAAAGATGACTTTTGGTAAAAACTCTTTTCTC
CTTTAAAAATATTTTAAGTGGTTTTTTTTGGTCTGTGTGTGTATGTTAAAAATTTGTAAA
AACCATTATTTGTTCAAAAGTATGTATGTCCCACCCTCAGAGATATGCACTTTTAAGTGA
AGAAAATGATATTGCTAGCAGTTTATTTAAAACTTGGGATCCTTTTTAAATAAAAAAATA
TAAATTTTAGAAGTTATTTCATAAAGCCATATGGTATTGACATATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATGAGAAAATGGAGACAGTGAAGACACAAGAACAAGAACAGTCTTACAGTTCTGGTGA
TAGTGATGTTAGCAGATGTTCATCTCCAAGGTCTGTCCTTGGAAAGGATGAACAAATAAA
TAAAGGTCATTGTGATTCTGGTACAAGAATCAAATCAAAGAAGGAAGAGAAACACTCTAC
ATCATTGTCCTCTCCCAGAGACCTGAGCTCATCCATCAGAGGAGACAGAGTATATTCCCC
ATATACCCACAGACACAGAAGGAGGGGAAGATCGAGAAGTTCAGATTCACGCTCCCAGAG
TAGGAGTGGGCATGATCAGAAGAATCGTAGAAAGCATCATGGGAAGAAAAGAATGAAAAG
CAAACGATCCAGAAGCAGGGAGAGTAGCAGACCTAGAGGTAGAAGAGACAAAAAGAGGTC
AAGAACTAGAGATAGCAGTTGGTCTAGAAGAAGCCAGACTCTGTCTCTAAGTAGTGAAAG
CACAAGCAGATCAAGATCTCGTAGCAGTGATCATGGTAAAAGAAGATCACGGAGCAGAAA
TAGAGATCGTTACTATTTAAGAAATAATTACGGAAGCAGATATAAGTGGGAGTATACTTA
CTATAGTAGAAACAAGGACAGGGATGGCTACGAATCATCTTACAGGAGAAGGACTCTGTC
CAGAGCTCATTATTCCAGACAATCTTCAAGTCCAGAGTTTAGAATTAATTCATCCTTTTC
TGAAAGAACAAATGCTAGGAAAAAAAATAATCACAGTGAAAGGAAATACTACTACTATGA
AAGGCATAGATCAAGGAGCCTGTCTAGTACTCGATCAAGGACTGCATCTACAGGGCCTGA
CCGGACAAGAAATGAAAAGCCTGGCGGGAAGCGAAAATACAAAACGCGGCATTTGGAAGG
TGCTAATGAAATGGCTCAGCCATCTCGTGAATTTGCTTCTAAAGTAAAGGAAAGTCATTA
CCAAAAATCTTCATCAAAATTGGATGCAAGCTACAAAAATGAGAGTGACAGCTTTTCAGA
CAGCCGATCATCAGACAGAGAGACAAAACACAAGAGGAGAAGGAGAAGGACCCGGAGCCT
AAGTGTAGAGATAGTTTATGAAGGGAAAGCTACCGATACAGCTAGACATCATAAAAAGAA
AAAGAAGAAACATAAGAAGAAGCATAAGAAACACCATGGCGATAATGCTTCACATTCCCC
AGTTGTGATTACCATTGACAGTGACAGTGATAAGGATTCTGAAGTAAAGGAGGATGTAGA
ATGTGACCCTAGTGGTCCTCAAGACCCTCTGCAAAGTGAATTTTTGGCTTCTTCCTTGGA
ATCATTTGAAACTAAAGATGTAGTTACAATAGAAGATGAATTTGGTGTCCTGAGCAAGGA
GTGTGATTTCACCACACTTAGTAACAACTTGAATAATGCCAACAAAACTGTAGATAATAT
TCCACCCCAGGCAGCTTCAGTTGAACAAACTCTTGATGTGAGAGAAGAGAGCACCTTTGC
CTCTCATTTGGAGAACCAGTCCAGTAATGGCTCGATTCAGACTGAGCTGTCAAGGCAGCT
GCCATCGCCACGGACATCATTAATGTCAGTGTCTCTTGGTAGAGACCATGATATGTCTTA
AAACTGCCAAAGCATCTCATTGAGAATCCTGATGGTATAAAAAGAGGAAAAGACAAGCAA
AAAACAATGTCATCTACTGCAGTCTATTTAAAGATGACTTTTGGTAAAAACTCTTTTCTC
CTTTAAAAATATTTTAAGTGGTTTTTTTTGGTCTGTGTGTGTATGTTAAAAATTTGTAAA
AACCATTATTTGTTCAAAAGTATGTATGTCCCACCCTCAGAGATATGCACTTTTAAGTGA
AGAAAATGATATTGCTAGCAGTTTATTTAAAACTTGGGATCCTTTTTAAATAAAAAAATA
TAAATTTTAGAAGTTATTTCATAAAGCCATATGGTATTGACATATTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61873898|ref|XP_586124.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61873898|ref|XP_586124.1|

Predicted RNA structure(s): 5 entry(ies)

More info

Predicted RNA structure(s): 5 entry(ies)

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               397-596, - strand, RNAz p=0.875367
               

               
               637-756, - strand, RNAz p=0.547472
               

               
               1077-1196, - strand, RNAz p=0.661911
               

               
               1357-1476, - strand, RNAz p=0.807966
               

               
               1554-1753, + strand, RNAz p=0.828283

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               397-596, - strand, RNAz p=0.875367
               

               
               637-756, - strand, RNAz p=0.547472
               

               
               1077-1196, - strand, RNAz p=0.661911
               

               
               1357-1476, - strand, RNAz p=0.807966
               

               
               1554-1753, + strand, RNAz p=0.828283

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1968, gnl|bosTau2|chr8 (5291988-5293908)
               

               
               1-1968, gnl|Hg17|chr9 (32533005-32531061)
               

               
               1-1968, gnl|Mm7|chr4 (40400225-40398345)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1968, gnl|bosTau2|chr8 (5291988-5293908)
               

               
               1-1968, gnl|Hg17|chr9 (32533005-32531061)
               

               
               1-1968, gnl|Mm7|chr4 (40400225-40398345)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

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               sag (0.36543)
               

               
               ski (0.29347)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               ski (0.29347)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	397-596, - strand, RNAz p=0.875367
	637-756, - strand, RNAz p=0.547472
	1077-1196, - strand, RNAz p=0.661911
	1357-1476, - strand, RNAz p=0.807966
	1554-1753, + strand, RNAz p=0.828283

	1-1968, gnl\|bosTau2\|chr8 (5291988-5293908)
	1-1968, gnl\|Hg17\|chr9 (32533005-32531061)
	1-1968, gnl\|Mm7\|chr4 (40400225-40398345)

	sag (0.36543)
	ski (0.29347)
	kid (0.259471)
	ova (0.258264)
	thg (0.253582)
	tra (0.246184)
	mgm (0.180343)
	ill (0.175593)
	eye (0.170503)
	mga (0.160205)
	fco (0.157208)
	lun (0.150489)
	fat (0.147427)
	lin (0.145603)
	spl (0.143184)
	csk (0.140746)
	ssp (0.13552)
	ste (0.135208)
	ute (0.132784)
	ret (0.128733)
	sug (0.127291)
	bla (0.124347)
	med (0.116252)
	ldo (0.0970026)