Non-Coding RNA Search

Ss1.1-rthg14_n8.5

Sequence:


               
               AGCAGAGCCTGGGCTCGCCTGTCCTTCGTCTCCATCTGCACCTAGGAAGCTCTTCCCCAA
GTTCGGTGTCTCCCAAGTTGGCTGCCAAATCTGTCTTGGGAAGAACTGCTTCCTTGTCTT
TGGTAGGGGAGGGAGTTACTCAGGAATGGTGTGGAGCTGGGAGTGTGGGGTATGGAGATC
TCAAACGGTCGACGTGGGGGTCCCAAGGGAATTGGAGGTGGGTCGTGGTGAGGCGGGTGG
GTGGGCAGGGAGTGGGGGCGGGGAAAGCGTGACAGGGAAATTCCTTTAGGCCACACGGTT
TACAAACCCAACATCATGTCTGTTTGTGTGTCTCTCAAGGTGAGAGTCTGATTTTTATAC
CAAAGAGGAAAAGATTTTTTTTCATATTTGGTTTGTCTATATTATATAAATATAAATATA
TATATATATATATACAGTTATATATATATTATTTTTTTGGTTCTCTCTCATTTTTTAGGG
AGGGAGGAAAGTACCAAGTTGCATTGAACTGTAATTAAGGAACATTCTGTATAATTTATG
ACACATTTCTATACTTGCAAAAATTATATCATTTTATGGATATAAGAGAAAAATGCCTTT
TTATAAAATTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGAGCCTGGGCTCGCCTGTCCTTCGTCTCCATCTGCACCTAGGAAGCTCTTCCCCAA
GTTCGGTGTCTCCCAAGTTGGCTGCCAAATCTGTCTTGGGAAGAACTGCTTCCTTGTCTT
TGGTAGGGGAGGGAGTTACTCAGGAATGGTGTGGAGCTGGGAGTGTGGGGTATGGAGATC
TCAAACGGTCGACGTGGGGGTCCCAAGGGAATTGGAGGTGGGTCGTGGTGAGGCGGGTGG
GTGGGCAGGGAGTGGGGGCGGGGAAAGCGTGACAGGGAAATTCCTTTAGGCCACACGGTT
TACAAACCCAACATCATGTCTGTTTGTGTGTCTCTCAAGGTGAGAGTCTGATTTTTATAC
CAAAGAGGAAAAGATTTTTTTTCATATTTGGTTTGTCTATATTATATAAATATAAATATA
TATATATATATATACAGTTATATATATATTATTTTTTTGGTTCTCTCTCATTTTTTAGGG
AGGGAGGAAAGTACCAAGTTGCATTGAACTGTAATTAAGGAACATTCTGTATAATTTATG
ACACATTTCTATACTTGCAAAAATTATATCATTTTATGGATATAAGAGAAAAATGCCTTT
TTATAAAATTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               414-533, - strand, RNAz p=0.933685

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               414-533, - strand, RNAz p=0.933685

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-610, gnl|bosTau2|chr3 (8429388-8429971)
               

               
               2-610, gnl|Hg17|chr1 (151136187-151136842)
               

               
               2-610, gnl|Mm7|chr3 (90066498-90065886)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-610, gnl|bosTau2|chr3 (8429388-8429971)
               

               
               2-610, gnl|Hg17|chr1 (151136187-151136842)
               

               
               2-610, gnl|Mm7|chr3 (90066498-90065886)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sme (0.305437)
               

               
               thg (0.253582)
               

               
               gul (0.177588)
               

               
               csp (0.161186)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               thg (0.253582)
               

               
               gul (0.177588)
               

               
               csp (0.161186)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

	2-610, gnl\|bosTau2\|chr3 (8429388-8429971)
	2-610, gnl\|Hg17\|chr1 (151136187-151136842)
	2-610, gnl\|Mm7\|chr3 (90066498-90065886)

	sme (0.305437)
	thg (0.253582)
	gul (0.177588)
	csp (0.161186)
	pgl (0.118483)
	jca (0.11396)