Non-Coding RNA Search

Ss1.1-rthg15_g20.5

Sequence:


               
               ATAGCAAACATCTATACCCCAGTTGCCCCTTCCTCCTATCTCTCCCTTGGGGGTAGTGTT
AAGGAATTCCATATGATGGTTTATTTTAAAACCTCAGACATCACTCTGAATCAGAATTTC
AGATGTTAGGTGACAGTAAGAAATAAATCTACAGCAGGAGAAGAAAAAAAGATGACAGCT
TGGATGAATTTTTAAATTGGGTGTTGTGAAACTATTTTTGTGCGTTTTAGCTGTCTTATT
TACAATGTTAACATAACTGTAGAAATGCCAAATTTATAATATGAGAAAGGACAACTATCA
TTTTGCTATGCCTACAAGTGTTTACATTGTTTAAATTTCCAGTTTTCTAAAGTGTTTTAA
ATTGTCAAAATGTGCTGAAACTGGATAAGTCTCACCTGTGTCAAGATATAAGGGAAGGAA
ATCTTGGCATATTTTCTAGTCTGAACCTTTTGGTTACTTTCAAGTATCTTTTTTCCCTGC
ATACCAAAGGCCTTCAGTTACTGTTTTCTTAGATTGTTCCCAGCAGTAGTTAGAAATGAT
TTGGTACATTCTAAGCCGAGATTTTCCCATACTGTGACTGCCATGCCTTGGAATATACGA
TTTTATGTTATCTCTATCAAAATGTGAATAATAAAATATTGATAGTAGTAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGCAAACATCTATACCCCAGTTGCCCCTTCCTCCTATCTCTCCCTTGGGGGTAGTGTT
AAGGAATTCCATATGATGGTTTATTTTAAAACCTCAGACATCACTCTGAATCAGAATTTC
AGATGTTAGGTGACAGTAAGAAATAAATCTACAGCAGGAGAAGAAAAAAAGATGACAGCT
TGGATGAATTTTTAAATTGGGTGTTGTGAAACTATTTTTGTGCGTTTTAGCTGTCTTATT
TACAATGTTAACATAACTGTAGAAATGCCAAATTTATAATATGAGAAAGGACAACTATCA
TTTTGCTATGCCTACAAGTGTTTACATTGTTTAAATTTCCAGTTTTCTAAAGTGTTTTAA
ATTGTCAAAATGTGCTGAAACTGGATAAGTCTCACCTGTGTCAAGATATAAGGGAAGGAA
ATCTTGGCATATTTTCTAGTCTGAACCTTTTGGTTACTTTCAAGTATCTTTTTTCCCTGC
ATACCAAAGGCCTTCAGTTACTGTTTTCTTAGATTGTTCCCAGCAGTAGTTAGAAATGAT
TTGGTACATTCTAAGCCGAGATTTTCCCATACTGTGACTGCCATGCCTTGGAATATACGA
TTTTATGTTATCTCTATCAAAATGTGAATAATAAAATATTGATAGTAGTAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               153-260, + strand, RNAz p=0.968261

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               153-260, + strand, RNAz p=0.968261

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-650, gnl|bosTau2|chr1 (61819800-61819138)
               

               
               2-650, gnl|Hg17|chr3 (172259514-172258905)
               

               
               2-650, gnl|Mm7|chr3 (28488540-28489116)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-650, gnl|bosTau2|chr1 (61819800-61819138)
               

               
               2-650, gnl|Hg17|chr3 (172259514-172258905)
               

               
               2-650, gnl|Mm7|chr3 (28488540-28489116)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fce (0.543183)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)

	2-650, gnl\|bosTau2\|chr1 (61819800-61819138)
	2-650, gnl\|Hg17\|chr3 (172259514-172258905)
	2-650, gnl\|Mm7\|chr3 (28488540-28489116)

	fce (0.543183)
	fco (0.157208)
	hyp (0.142837)
	ret (0.128733)
	thg (0.126791)
	ecc (0.115035)