Ss1.1-rthg15_j20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCACTGCAGAATCCACACGGGAGAGAAACCCTATAATTGTGAGGAGTGTGGGAAAGTGTT CCGGCAGGCCTCAAATCTTCTGGCACATCAGAGAGTCCACAGTGGAGAAAAACCATTCAA ATGTGAAGAGTGTGGGAAAAGCTTCGGTCGGAGTTCACACCTGCAAGCCCATCAAAAAGT CCACACTGGAGAAAAGCCATATAAATGTGAGGAGTGTGGGAAGGGCTTCAAGTGGAGCTT GAACCTCGACATGCATCAGAGGGTTCATACAGGAGAAAAACCGTATAAATGTGGGGAGTG TGGGAAGCATTTCAGTCAGGCCTCAAGTCTTCAGCTTCACCAGAGCGTCCACACTGGAGA GAAGCCATACAGATGTGATGTGTGTGGGAAAGTCTTCAGTCGGTCTTCACAACTACAGTC TCATCAGAGAGTTCACACAGGAGAGAAACCTTACAAGTGTGAGACATGTGGTAAGAGCTT CAGTTGGCGCTCAAACCTAACAATTCATTACAGAATCCATGCTGGTGATAAATCCTATAA AACTGGTAGAGGCGGTAAGACCATCAGTTCACACAGGAACAAAATTCTATAAAATGATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCACTGCAGAATCCACACGGGAGAGAAACCCTATAATTGTGAGGAGTGTGGGAAAGTGTT CCGGCAGGCCTCAAATCTTCTGGCACATCAGAGAGTCCACAGTGGAGAAAAACCATTCAA ATGTGAAGAGTGTGGGAAAAGCTTCGGTCGGAGTTCACACCTGCAAGCCCATCAAAAAGT CCACACTGGAGAAAAGCCATATAAATGTGAGGAGTGTGGGAAGGGCTTCAAGTGGAGCTT GAACCTCGACATGCATCAGAGGGTTCATACAGGAGAAAAACCGTATAAATGTGGGGAGTG TGGGAAGCATTTCAGTCAGGCCTCAAGTCTTCAGCTTCACCAGAGCGTCCACACTGGAGA GAAGCCATACAGATGTGATGTGTGTGGGAAAGTCTTCAGTCGGTCTTCACAACTACAGTC TCATCAGAGAGTTCACACAGGAGAGAAACCTTACAAGTGTGAGACATGTGGTAAGAGCTT CAGTTGGCGCTCAAACCTAACAATTCATTACAGAATCCATGCTGGTGATAAATCCTATAA AACTGGTAGAGGCGGTAAGACCATCAGTTCACACAGGAACAAAATTCTATAAAATGATTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 160-319, + strand, RNAz p=0.803789 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 160-319, + strand, RNAz p=0.803789 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-600, gnl|bosTau2|chr14 (25877307-25877907) | |
| 1-600, gnl|Hg17|chr19 (49373067-49373670) | |
| 8-568, gnl|bosTau2|chr11 (74554952-74554392) | |
| 8-568, gnl|canFam2|chr23 (12967835-12967522) | |
| 8-568, gnl|danRer3|chr16 (16133821-16134134) | |
| 8-568, gnl|dasNov1|scaffold_62801 (79-307) | |
| 8-568, gnl|echTel1|scaffold_323348 (2407-2093) | |
| 8-568, gnl|fr1|chrUn (318961032-318961345) | |
| 8-568, gnl|galGal2|chrUn (125531462-125531775) | |
| 8-568, gnl|hg17|chr11 (128670671-128670982) | |
| 8-568, gnl|Hg17|chr9 (127286254-127286814) | |
| 8-568, gnl|loxAfr1|scaffold_214806 (840-1154) | |
| 8-568, gnl|Mm7|chr11 (62796154-62795594) | |
| 8-568, gnl|mm7|chr15 (76030664-76030351) | |
| 8-568, gnl|monDom2|scaffold_5 (78314251-78313854) | |
| 8-568, gnl|oryCun1|scaffold_172392 (10471-10158) | |
| 8-568, gnl|panTro1|chr9 (130806421-130806732) | |
| 8-568, gnl|rheMac2|chr14 (127423842-127424152) | |
| 8-568, gnl|rn3|chr1 (84866668-84866355) | |
| 8-568, gnl|tetNig1|chrUn_random (115723032-115723345) | |
| 8-568, gnl|xenTro1|scaffold_1499 (110107-110506) | |
| 9-540, gnl|bosTau2|chr10 (8996776-8996245) | |
| 9-540, gnl|Hg17|chr19 (42818581-42817966) | |
| 9-540, gnl|Mm7|chr2 (127310207-127309676) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-600, gnl|bosTau2|chr14 (25877307-25877907) | |
| 1-600, gnl|Hg17|chr19 (49373067-49373670) | |
| 8-568, gnl|bosTau2|chr11 (74554952-74554392) | |
| 8-568, gnl|canFam2|chr23 (12967835-12967522) | |
| 8-568, gnl|danRer3|chr16 (16133821-16134134) | |
| 8-568, gnl|dasNov1|scaffold_62801 (79-307) | |
| 8-568, gnl|echTel1|scaffold_323348 (2407-2093) | |
| 8-568, gnl|fr1|chrUn (318961032-318961345) | |
| 8-568, gnl|galGal2|chrUn (125531462-125531775) | |
| 8-568, gnl|hg17|chr11 (128670671-128670982) | |
| 8-568, gnl|Hg17|chr9 (127286254-127286814) | |
| 8-568, gnl|loxAfr1|scaffold_214806 (840-1154) | |
| 8-568, gnl|Mm7|chr11 (62796154-62795594) | |
| 8-568, gnl|mm7|chr15 (76030664-76030351) | |
| 8-568, gnl|monDom2|scaffold_5 (78314251-78313854) | |
| 8-568, gnl|oryCun1|scaffold_172392 (10471-10158) | |
| 8-568, gnl|panTro1|chr9 (130806421-130806732) | |
| 8-568, gnl|rheMac2|chr14 (127423842-127424152) | |
| 8-568, gnl|rn3|chr1 (84866668-84866355) | |
| 8-568, gnl|tetNig1|chrUn_random (115723032-115723345) | |
| 8-568, gnl|xenTro1|scaffold_1499 (110107-110506) | |
| 9-540, gnl|bosTau2|chr10 (8996776-8996245) | |
| 9-540, gnl|Hg17|chr19 (42818581-42817966) | |
| 9-540, gnl|Mm7|chr2 (127310207-127309676) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cmu (0.186393) | |
| sin (0.174948) | |
| csk (0.140746) | |
| thg (0.126791) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.186393) | |
| sin (0.174948) | |
| csk (0.140746) | |
| thg (0.126791) |