Ss1.1-rthg16_b14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTGAAACCCCAGAACGAGTTTTTGTAGTAATGGAAAAGCTGCATGGAGATATGTTGGA AATGATTCTATCCAGTGAGAAAAGTCGACTTCCAGAACGAATTACTAAATTCATGGTCAC ACAGATACTTGTTGCTTTGAGGAATCTACATTTTAAGAATATTGTGCACTGTGATTTAAA GCCAGAAAATGTGCTACTTGCATCAGCAGAGCCATTTCCCCAGGTGAAGCTATGTGACTT TGGTTTTGCACGAATCATTGGTGAAAAGTCATTCAGGAGATCTGTGGTAGGAACTCCAGC ATACTTAGCCCCTGAAGTTCTCAGGAGCAAAGGCTACAACCGTTCTCTAGATATGTGGTC AGTGGGAGTTATTGTCTATGTGAGCCTCAGTGGCACATTTCCTTTTAATGAAGATGAAGA TATAAACGACCAAATCCAAAATGCTGCGTTTATGTACCCACCAAATCCATGGAGAGAAAT TTCTGGTGAAGCAATTGACTTGATAAATAATCTACTTCAAGTGAAGATGAGAAAACGTTA CAGTGTGGACAAATCTCTTAGTCATCCCTGGCTACAGGACTATCAGACTTGGCTTGACCT TAGAGAATTTGAAACTCGCATTGGTGAACGTTACATTACACACGAAAGTGATGATGCCCG TTGGGAAATACATGCTTACACACACAACCTTGTATACCCAAAGCACTTCATTATGGCTCC CAATCCAGATGACATGGAAGAAGATCCTTAATTATCAATGAGCTAATAACTTCATTAAGG AAGGATTTCATGTTATGGACCGATATTTTGCTGCATAAGTGTTGTTCTCTGTAGATTGTC ATCTGAAAGGATGCAAAGACATGAGGAAATACGATAAGGAAACAGTGACACCAATACTGT AGTTCATAATGAGTAGGTACAAGAGGGGAAACTGAGTAATAAAAACATAATGGAACCCAA GGTGAAGCTTTTCATAAATTTTTATAGCATAAGCAATAACTGGTTTTTGTATTTTTTCCT AATTGTCCATTTTAGTACAATAGTAGCACCTAATTATCTATCTTCCCTTTCCTATTCTTA CGTTATTTTTTTAAAAGGCAGAAAAGTCAAGCTAGAGTCCAGTTACTGCGTAGCTTGACC AAATAATACAAGAGTTATAAGGTTGATTTCTAAAAAGATTTGCGCTTAAGTGCTGAGAGG CTACCAGCATGCCTTTCCTATAAACATTTAACTGGCCATAGAGGCATTGAGGGGGGTTTT CCTAGACCCCACGAAAGGGAGTGATGGACTGCTCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTGAAACCCCAGAACGAGTTTTTGTAGTAATGGAAAAGCTGCATGGAGATATGTTGGA AATGATTCTATCCAGTGAGAAAAGTCGACTTCCAGAACGAATTACTAAATTCATGGTCAC ACAGATACTTGTTGCTTTGAGGAATCTACATTTTAAGAATATTGTGCACTGTGATTTAAA GCCAGAAAATGTGCTACTTGCATCAGCAGAGCCATTTCCCCAGGTGAAGCTATGTGACTT TGGTTTTGCACGAATCATTGGTGAAAAGTCATTCAGGAGATCTGTGGTAGGAACTCCAGC ATACTTAGCCCCTGAAGTTCTCAGGAGCAAAGGCTACAACCGTTCTCTAGATATGTGGTC AGTGGGAGTTATTGTCTATGTGAGCCTCAGTGGCACATTTCCTTTTAATGAAGATGAAGA TATAAACGACCAAATCCAAAATGCTGCGTTTATGTACCCACCAAATCCATGGAGAGAAAT TTCTGGTGAAGCAATTGACTTGATAAATAATCTACTTCAAGTGAAGATGAGAAAACGTTA CAGTGTGGACAAATCTCTTAGTCATCCCTGGCTACAGGACTATCAGACTTGGCTTGACCT TAGAGAATTTGAAACTCGCATTGGTGAACGTTACATTACACACGAAAGTGATGATGCCCG TTGGGAAATACATGCTTACACACACAACCTTGTATACCCAAAGCACTTCATTATGGCTCC CAATCCAGATGACATGGAAGAAGATCCTTAATTATCAATGAGCTAATAACTTCATTAAGG AAGGATTTCATGTTATGGACCGATATTTTGCTGCATAAGTGTTGTTCTCTGTAGATTGTC ATCTGAAAGGATGCAAAGACATGAGGAAATACGATAAGGAAACAGTGACACCAATACTGT AGTTCATAATGAGTAGGTACAAGAGGGGAAACTGAGTAATAAAAACATAATGGAACCCAA GGTGAAGCTTTTCATAAATTTTTATAGCATAAGCAATAACTGGTTTTTGTATTTTTTCCT AATTGTCCATTTTAGTACAATAGTAGCACCTAATTATCTATCTTCCCTTTCCTATTCTTA CGTTATTTTTTTAAAAGGCAGAAAAGTCAAGCTAGAGTCCAGTTACTGCGTAGCTTGACC AAATAATACAAGAGTTATAAGGTTGATTTCTAAAAAGATTTGCGCTTAAGTGCTGAGAGG CTACCAGCATGCCTTTCCTATAAACATTTAACTGGCCATAGAGGCATTGAGGGGGGTTTT CCTAGACCCCACGAAAGGGAGTGATGGACTGCTCTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-130, gnl|bosTau2|chr11 (18848039-18847910) | |
| 1-130, gnl|canFam2|chr17 (32719144-32719324) | |
| 1-130, gnl|danRer3|chr17 (48040010-48040191) | |
| 1-130, gnl|dasNov1|scaffold_170326 (3531-3364) | |
| 1-130, gnl|echTel1|scaffold_294525 (3498-3660) | |
| 1-130, gnl|fr1|chrUn (176213850-176213678) | |
| 1-130, gnl|galGal2|chr3 (29832358-29832531) | |
| 1-130, gnl|hg17|chr2 (37399006-37399189) | |
| 1-130, gnl|Hg17|chr2 (37399140-37399011) | |
| 1-130, gnl|loxAfr1|scaffold_3391 (84403-84585) | |
| 1-130, gnl|mm7|chr17 (77257690-77257866) | |
| 1-130, gnl|Mm7|chr17 (77257819-77257690) | |
| 1-130, gnl|monDom2|scaffold_23 (39944401-39944573) | |
| 1-130, gnl|oryCun1|scaffold_118635 (14773-14591) | |
| 1-130, gnl|panTro1|chr12 (38864491-38864674) | |
| 1-130, gnl|rheMac2|chr13 (37241821-37242004) | |
| 1-130, gnl|rn3|chr6 (1735760-1735943) | |
| 1-130, gnl|tetNig1|chr10 (2745006-2744836) | |
| 1-130, gnl|xenTro1|scaffold_199 (1747142-1747323) | |
| 220-491, gnl|bosTau2|chr11 (18845121-18844850) | |
| 220-491, gnl|canFam2|chr17 (32716166-32716463) | |
| 220-491, gnl|danRer3|chr17 (48034098-48034369) | |
| 220-491, gnl|dasNov1|scaffold_45632 (46137-45855) | |
| 220-491, gnl|echTel1|scaffold_317676 (51448-51744) | |
| 220-491, gnl|fr1|chrUn (176214416-176214141) | |
| 220-491, gnl|galGal2|chr3 (29831304-29831598) | |
| 220-491, gnl|hg17|chr2 (37395455-37395752) | |
| 220-491, gnl|Hg17|chr2 (37395727-37395456) | |
| 220-491, gnl|loxAfr1|scaffold_3391 (81398-81694) | |
| 220-491, gnl|mm7|chr17 (77255027-77255326) | |
| 220-491, gnl|Mm7|chr17 (77255299-77255028) | |
| 220-491, gnl|monDom2|scaffold_23 (39942433-39942730) | |
| 220-491, gnl|oryCun1|scaffold_118635 (17787-17490) | |
| 220-491, gnl|panTro1|chr12 (38860944-38861241) | |
| 220-491, gnl|rheMac2|chr13 (37238227-37238518) | |
| 220-491, gnl|rn3|chr6 (1732874-1733173) | |
| 220-491, gnl|tetNig1|chr10 (2746187-2745915) | |
| 220-491, gnl|xenTro1|scaffold_199 (1740889-1741189) | |
| 576-1296, gnl|bosTau2|chr11 (18841984-18841255) | |
| 576-1296, gnl|Hg17|chr2 (37392146-37391392) | |
| 576-1296, gnl|Mm7|chr17 (77252586-77251943) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-130, gnl|bosTau2|chr11 (18848039-18847910) | |
| 1-130, gnl|canFam2|chr17 (32719144-32719324) | |
| 1-130, gnl|danRer3|chr17 (48040010-48040191) | |
| 1-130, gnl|dasNov1|scaffold_170326 (3531-3364) | |
| 1-130, gnl|echTel1|scaffold_294525 (3498-3660) | |
| 1-130, gnl|fr1|chrUn (176213850-176213678) | |
| 1-130, gnl|galGal2|chr3 (29832358-29832531) | |
| 1-130, gnl|hg17|chr2 (37399006-37399189) | |
| 1-130, gnl|Hg17|chr2 (37399140-37399011) | |
| 1-130, gnl|loxAfr1|scaffold_3391 (84403-84585) | |
| 1-130, gnl|mm7|chr17 (77257690-77257866) | |
| 1-130, gnl|Mm7|chr17 (77257819-77257690) | |
| 1-130, gnl|monDom2|scaffold_23 (39944401-39944573) | |
| 1-130, gnl|oryCun1|scaffold_118635 (14773-14591) | |
| 1-130, gnl|panTro1|chr12 (38864491-38864674) | |
| 1-130, gnl|rheMac2|chr13 (37241821-37242004) | |
| 1-130, gnl|rn3|chr6 (1735760-1735943) | |
| 1-130, gnl|tetNig1|chr10 (2745006-2744836) | |
| 1-130, gnl|xenTro1|scaffold_199 (1747142-1747323) | |
| 220-491, gnl|bosTau2|chr11 (18845121-18844850) | |
| 220-491, gnl|canFam2|chr17 (32716166-32716463) | |
| 220-491, gnl|danRer3|chr17 (48034098-48034369) | |
| 220-491, gnl|dasNov1|scaffold_45632 (46137-45855) | |
| 220-491, gnl|echTel1|scaffold_317676 (51448-51744) | |
| 220-491, gnl|fr1|chrUn (176214416-176214141) | |
| 220-491, gnl|galGal2|chr3 (29831304-29831598) | |
| 220-491, gnl|hg17|chr2 (37395455-37395752) | |
| 220-491, gnl|Hg17|chr2 (37395727-37395456) | |
| 220-491, gnl|loxAfr1|scaffold_3391 (81398-81694) | |
| 220-491, gnl|mm7|chr17 (77255027-77255326) | |
| 220-491, gnl|Mm7|chr17 (77255299-77255028) | |
| 220-491, gnl|monDom2|scaffold_23 (39942433-39942730) | |
| 220-491, gnl|oryCun1|scaffold_118635 (17787-17490) | |
| 220-491, gnl|panTro1|chr12 (38860944-38861241) | |
| 220-491, gnl|rheMac2|chr13 (37238227-37238518) | |
| 220-491, gnl|rn3|chr6 (1732874-1733173) | |
| 220-491, gnl|tetNig1|chr10 (2746187-2745915) | |
| 220-491, gnl|xenTro1|scaffold_199 (1740889-1741189) | |
| 576-1296, gnl|bosTau2|chr11 (18841984-18841255) | |
| 576-1296, gnl|Hg17|chr2 (37392146-37391392) | |
| 576-1296, gnl|Mm7|chr17 (77252586-77251943) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| fce (0.271592) | |
| mas (0.210305) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| bla (0.124347) | |
| jca (0.11396) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| mas (0.210305) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| bla (0.124347) | |
| jca (0.11396) |