Non-Coding RNA Search

Ss1.1-rthg16_p11.5

Sequence:


               
               CATACACCCACGCAGGCAGTCAGGAATGCTGACGTGAACTTACAGATAGTTGCAAAAGTG
GTCATCATCCACCGGGCAGTAACCAGTTAACATCCCACCGCACAGAGTCCACTGCCGTTC
TTACGGACAAGCATCTGTATTATTACCAGTTTTCAACAACTTACAGAGCTGTAGAATAGC
TCCAGCCAAATGGATGCACTGGAGGTGGGATACCCAGTCATCTTTTTGGTCCTTCCACAG
TCTATCCCAGTTTTTCCTGTCACAGAGAAACTTTATATGTATCAAATACTACGCGAAAGT
AGAATAAGGTTTAAAAAGTAAGTGGACTAGTCTTTGTTTCTCTTTCAGGTTGTTTGTTGA
AGAGAGGAAAGGCAAGGGTCCTATGTTGAGGAGGGGATCAGATTTAAAGGAAGTGTTGCT
TTGATTTTGTTTTCTTAAGTAAAGGAGATTTAAGTGTGTGCATTGGCTCTGGAGAGAAGC
CAGGAGAGGGTGAATGATAGTGAAAGCAACAGTGGGTATTTTAAAGGAGGCAGTAGCAAT
TACATTCAAAATCACAGTTTAGATTTGGAAAGAAGAAAAAGATTCTTCTTCCTCTGAGAG
TAGAGGAGAAGGAAAGGAGCTAGGCTGTAGATTTATTTGAAGTCATAAAAAATGAAGTGG
AGAGTCTCTAAAGAAAAAGAAGTATTTATGGTAGGTGGCTTAAAGAATACTGTTAAGATT
TACTGAATGGGAAAGGAACGGTACTAGGATGAATGAAAGGATTGCCATGTCAGCCTTTTA
CATTGTGTTAAGCACCAAATGGCTGAAAATACAGGTCAGGATCTTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATACACCCACGCAGGCAGTCAGGAATGCTGACGTGAACTTACAGATAGTTGCAAAAGTG
GTCATCATCCACCGGGCAGTAACCAGTTAACATCCCACCGCACAGAGTCCACTGCCGTTC
TTACGGACAAGCATCTGTATTATTACCAGTTTTCAACAACTTACAGAGCTGTAGAATAGC
TCCAGCCAAATGGATGCACTGGAGGTGGGATACCCAGTCATCTTTTTGGTCCTTCCACAG
TCTATCCCAGTTTTTCCTGTCACAGAGAAACTTTATATGTATCAAATACTACGCGAAAGT
AGAATAAGGTTTAAAAAGTAAGTGGACTAGTCTTTGTTTCTCTTTCAGGTTGTTTGTTGA
AGAGAGGAAAGGCAAGGGTCCTATGTTGAGGAGGGGATCAGATTTAAAGGAAGTGTTGCT
TTGATTTTGTTTTCTTAAGTAAAGGAGATTTAAGTGTGTGCATTGGCTCTGGAGAGAAGC
CAGGAGAGGGTGAATGATAGTGAAAGCAACAGTGGGTATTTTAAAGGAGGCAGTAGCAAT
TACATTCAAAATCACAGTTTAGATTTGGAAAGAAGAAAAAGATTCTTCTTCCTCTGAGAG
TAGAGGAGAAGGAAAGGAGCTAGGCTGTAGATTTATTTGAAGTCATAAAAAATGAAGTGG
AGAGTCTCTAAAGAAAAAGAAGTATTTATGGTAGGTGGCTTAAAGAATACTGTTAAGATT
TACTGAATGGGAAAGGAACGGTACTAGGATGAATGAAAGGATTGCCATGTCAGCCTTTTA
CATTGTGTTAAGCACCAAATGGCTGAAAATACAGGTCAGGATCTTCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               541-642, - strand, RNAz p=0.798704

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               541-642, - strand, RNAz p=0.798704

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-828, gnl|bosTau2|chr16 (42558927-42559743)
               

               
               4-828, gnl|Hg17|chr1 (175575831-175576940)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-828, gnl|bosTau2|chr16 (42558927-42559743)
               

               
               4-828, gnl|Hg17|chr1 (175575831-175576940)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               thg (0.253582)
               

               
               rec (0.17307)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)
               

               
               rec (0.17307)

	4-828, gnl\|bosTau2\|chr16 (42558927-42559743)
	4-828, gnl\|Hg17\|chr1 (175575831-175576940)