Ss1.1-rthg17_d1.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTCTTTCAGGGTTGCTTCCTTAAGTGCTGGGATTGGAAGCGATCAGTCCAGGGAGCCAG CAAGGCATCTGGCTCTCAAAATGCTGGCAGATTCCAGTCTGTGCAAAGAGGTGGCACCTG GGTCTTCTCTGCTTCGCCCTGGGGGCCTGGCTTTGTGCCATCCTTTGTTTTAACTGGGGA GAAGAGGGAAAGCGTTGGGTGCAAGCAGTGGCTTTTTGCTTGGCGCTGACTTCTCCAACA GTCAGTCTTAAGCCCCTTTCCCCTGAGCATGAAGTCCTTCTTTCCCCGGGTCTCACTGAA GGCAGAGAGCCTTACTCCTCTCTAGCCAGACTTCTCAGGAAGTTCCTGGAGACTAAGCAT GTAAGACAGAGCACCTAAGAGGTGCTAGAAGGTACTGAACCAGGCCGGCTTCGGCCTTTG AGCAGACAGCTGGAAGTCCTAGCTCCCCAGGTTGGTGGGATCTCCCTACCCTCGTTTCCT TTCTCAGCCTACTGATGTGGGGGCAGGTCAGGAAGCATTCTCTGGGACCTTTAGGAGGGA CCTTGTGACGAGTAGGTAACATTCTTGAGCCCTCTCAGGGTCTTTTCACCACTGGAAGAG CTTAAGGACAGTTTGCTGGAGAAGCGTAGCCAAGCACACACACACACTCTTATCAGAAGA GCTGTGCCTGCTGCCATTCCAGCTGGATGAACTATGCAAACCATGAACACCCGAGGGCCT TGGCAGTCAGCCCCACCCCAGCCCCCAGTGCAGCCACGATTTCAGACTGGGAGAACCGAC CATGACTTTGGGGACCCTCGAAGGGGACCTGTGTCACGGTACACACAAACTTAAGGCTTT CTTTCCATCGTCAAACGCTAACCCCCTTTGGGGGAATGAAATAATTTCCTCAAGTGGTTG CCAGCTGAACACTGGGCCACTTAGCTGACATTATACCAAGTCCTGCATGGTTTGATTCTG GGCTGTGTGGCCTTTGTAGGAAATTGGGGGGGGGGATCAAGGGATTTCCCTGTGAATGCA TTTTTCACCTTTCTGCTGGACAGTAAATACTCTAGTTTACAGTGCCTACCAGTTTCACAC AGGATTCAGCTGCTCCCTTCCGCTGTGAAACAGGTCTCCCCACGTTCAGCTCAGTTACAA ACACGCAATAACTTCAGGGCAGAAGCTGGCTTTGTCCCCTTACTTAAAACTTGCTTTCTC TGCTGAAGCCTTACCGCTCCCTACCACCTCCCAGTTTCCCTGATGGTTGGTTTGTACTGA TGTCATTTACTTATTGTGGAGAAAGAACTTGCCTTGAAGTCTTCTAACCTCGTGGTGAAG GTTTCCATTTAGGAAAAAAGGTGTCAACCCCCCTCTCCCCTTTGTATCTTCTTTATTATA CCAAATAAAAGCTGGGAATTCCAAGCTCCCATTTCAGTTACTGTCATCTAACCTAGGTAG AAAACTTGATTTTTATTCTTGACTGCTCTCTCATGCCCCTCATGGATCCTTGGCCTTATC ATGGAAACATCTAATTTTTCCAACTATTCCATGGCTTTTGCTGTGGTTGTTCTGAGATTT CAGTTGAGACTTGTTTTAAAAGACCTGGAGCGCTGACTGGTTCATAATTCACTGGAATAG CTGGATCCAAATGAGCGAGAATAAGCTGTACAGGAATGAGTGCTCAATATATATTGTATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTCTTTCAGGGTTGCTTCCTTAAGTGCTGGGATTGGAAGCGATCAGTCCAGGGAGCCAG CAAGGCATCTGGCTCTCAAAATGCTGGCAGATTCCAGTCTGTGCAAAGAGGTGGCACCTG GGTCTTCTCTGCTTCGCCCTGGGGGCCTGGCTTTGTGCCATCCTTTGTTTTAACTGGGGA GAAGAGGGAAAGCGTTGGGTGCAAGCAGTGGCTTTTTGCTTGGCGCTGACTTCTCCAACA GTCAGTCTTAAGCCCCTTTCCCCTGAGCATGAAGTCCTTCTTTCCCCGGGTCTCACTGAA GGCAGAGAGCCTTACTCCTCTCTAGCCAGACTTCTCAGGAAGTTCCTGGAGACTAAGCAT GTAAGACAGAGCACCTAAGAGGTGCTAGAAGGTACTGAACCAGGCCGGCTTCGGCCTTTG AGCAGACAGCTGGAAGTCCTAGCTCCCCAGGTTGGTGGGATCTCCCTACCCTCGTTTCCT TTCTCAGCCTACTGATGTGGGGGCAGGTCAGGAAGCATTCTCTGGGACCTTTAGGAGGGA CCTTGTGACGAGTAGGTAACATTCTTGAGCCCTCTCAGGGTCTTTTCACCACTGGAAGAG CTTAAGGACAGTTTGCTGGAGAAGCGTAGCCAAGCACACACACACACTCTTATCAGAAGA GCTGTGCCTGCTGCCATTCCAGCTGGATGAACTATGCAAACCATGAACACCCGAGGGCCT TGGCAGTCAGCCCCACCCCAGCCCCCAGTGCAGCCACGATTTCAGACTGGGAGAACCGAC CATGACTTTGGGGACCCTCGAAGGGGACCTGTGTCACGGTACACACAAACTTAAGGCTTT CTTTCCATCGTCAAACGCTAACCCCCTTTGGGGGAATGAAATAATTTCCTCAAGTGGTTG CCAGCTGAACACTGGGCCACTTAGCTGACATTATACCAAGTCCTGCATGGTTTGATTCTG GGCTGTGTGGCCTTTGTAGGAAATTGGGGGGGGGGATCAAGGGATTTCCCTGTGAATGCA TTTTTCACCTTTCTGCTGGACAGTAAATACTCTAGTTTACAGTGCCTACCAGTTTCACAC AGGATTCAGCTGCTCCCTTCCGCTGTGAAACAGGTCTCCCCACGTTCAGCTCAGTTACAA ACACGCAATAACTTCAGGGCAGAAGCTGGCTTTGTCCCCTTACTTAAAACTTGCTTTCTC TGCTGAAGCCTTACCGCTCCCTACCACCTCCCAGTTTCCCTGATGGTTGGTTTGTACTGA TGTCATTTACTTATTGTGGAGAAAGAACTTGCCTTGAAGTCTTCTAACCTCGTGGTGAAG GTTTCCATTTAGGAAAAAAGGTGTCAACCCCCCTCTCCCCTTTGTATCTTCTTTATTATA CCAAATAAAAGCTGGGAATTCCAAGCTCCCATTTCAGTTACTGTCATCTAACCTAGGTAG AAAACTTGATTTTTATTCTTGACTGCTCTCTCATGCCCCTCATGGATCCTTGGCCTTATC ATGGAAACATCTAATTTTTCCAACTATTCCATGGCTTTTGCTGTGGTTGTTCTGAGATTT CAGTTGAGACTTGTTTTAAAAGACCTGGAGCGCTGACTGGTTCATAATTCACTGGAATAG CTGGATCCAAATGAGCGAGAATAAGCTGTACAGGAATGAGTGCTCAATATATATTGTATA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1347-1457, - strand, RNAz p=0.981251 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1347-1457, - strand, RNAz p=0.981251 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 468-849, gnl|bosTau2|chr19 (8902819-8902422) | |
| 468-849, gnl|Hg17|chr17 (30361949-30361256) | |
| 910-1241, gnl|bosTau2|chr19 (8902418-8902103) | |
| 910-1241, gnl|canFam2|chr9 (41665133-41664780) | |
| 910-1241, gnl|canFam2|chr9 (41665152-41664695) | |
| 910-1241, gnl|dasNov1|scaffold_134498 (1384-1853) | |
| 910-1241, gnl|dasNov1|scaffold_3522 (33058-32705) | |
| 910-1241, gnl|echTel1|scaffold_291858 (83886-84309) | |
| 910-1241, gnl|echTel1|scaffold_313042 (56859-56505) | |
| 910-1241, gnl|hg17|chr17 (30360749-30361081) | |
| 910-1241, gnl|Hg17|chr17 (30361252-30360885) | |
| 910-1241, gnl|hg17|chr18 (45487932-45488398) | |
| 910-1241, gnl|loxAfr1|scaffold_618 (10147-10535) | |
| 910-1241, gnl|loxAfr1|scaffold_618 (10127-10596) | |
| 910-1241, gnl|mm7|chr11 (82885846-82886170) | |
| 910-1241, gnl|Mm7|chr11 (82886304-82885979) | |
| 910-1241, gnl|oryCun1|scaffold_173005 (64467-64108) | |
| 910-1241, gnl|oryCun1|scaffold_173005 (64473-64040) | |
| 910-1241, gnl|panTro1|chr17 (41965642-41966108) | |
| 910-1241, gnl|panTro1|chr19 (33882047-33882382) | |
| 910-1241, gnl|rheMac2|chr16 (30306841-30307158) | |
| 910-1241, gnl|rheMac2|chr18 (42750518-42750985) | |
| 910-1241, gnl|rn3|chr10 (71037196-71037512) | |
| 1347-1576, gnl|bosTau2|chr19 (8901938-8901710) | |
| 1347-1576, gnl|Hg17|chr17 (30360728-30360503) | |
| 1347-1576, gnl|Mm7|chr11 (82885837-82885625) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 468-849, gnl|bosTau2|chr19 (8902819-8902422) | |
| 468-849, gnl|Hg17|chr17 (30361949-30361256) | |
| 910-1241, gnl|bosTau2|chr19 (8902418-8902103) | |
| 910-1241, gnl|canFam2|chr9 (41665133-41664780) | |
| 910-1241, gnl|canFam2|chr9 (41665152-41664695) | |
| 910-1241, gnl|dasNov1|scaffold_134498 (1384-1853) | |
| 910-1241, gnl|dasNov1|scaffold_3522 (33058-32705) | |
| 910-1241, gnl|echTel1|scaffold_291858 (83886-84309) | |
| 910-1241, gnl|echTel1|scaffold_313042 (56859-56505) | |
| 910-1241, gnl|hg17|chr17 (30360749-30361081) | |
| 910-1241, gnl|Hg17|chr17 (30361252-30360885) | |
| 910-1241, gnl|hg17|chr18 (45487932-45488398) | |
| 910-1241, gnl|loxAfr1|scaffold_618 (10147-10535) | |
| 910-1241, gnl|loxAfr1|scaffold_618 (10127-10596) | |
| 910-1241, gnl|mm7|chr11 (82885846-82886170) | |
| 910-1241, gnl|Mm7|chr11 (82886304-82885979) | |
| 910-1241, gnl|oryCun1|scaffold_173005 (64467-64108) | |
| 910-1241, gnl|oryCun1|scaffold_173005 (64473-64040) | |
| 910-1241, gnl|panTro1|chr17 (41965642-41966108) | |
| 910-1241, gnl|panTro1|chr19 (33882047-33882382) | |
| 910-1241, gnl|rheMac2|chr16 (30306841-30307158) | |
| 910-1241, gnl|rheMac2|chr18 (42750518-42750985) | |
| 910-1241, gnl|rn3|chr10 (71037196-71037512) | |
| 1347-1576, gnl|bosTau2|chr19 (8901938-8901710) | |
| 1347-1576, gnl|Hg17|chr17 (30360728-30360503) | |
| 1347-1576, gnl|Mm7|chr11 (82885837-82885625) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| spl (0.286369) | |
| thg (0.253582) | |
| ill (0.175593) | |
| sin (0.174948) | |
| cag (0.151194) | |
| fat (0.147427) | |
| lin (0.145603) | |
| pgl (0.118483) | |
| spc (0.113366) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.286369) | |
| thg (0.253582) | |
| ill (0.175593) | |
| sin (0.174948) | |
| cag (0.151194) | |
| fat (0.147427) | |
| lin (0.145603) | |
| pgl (0.118483) | |
| spc (0.113366) |