Non-Coding RNA Search

Ss1.1-rthg17_d14.5

Sequence:


               
               GATAATTCTTATGGTCACAGGTGGTTTCCGTTTGTGCTGAACTAGGAATTGGAAGATGCA
TGTGGTTGTCTCCACTTGTTGCCTGGGATGATTCTTTTTGCCCTCTCTGGGTCTCTATTT
TCCTAGTAAAAGTATTTGTGCAGTTTGTGCAGAGGACTTTGTGGATCAAACGAAGTAAGT
AAAAACACTTGGGATACCCAAGCATGATACATATATAAATGGGTTGTATATTTCTAATTC
AGGTAGTAGAAGAAAACAAATGTGTACTAGAGAGATTTCGCGTAAAGTGACTGCTTGGGC
TGCAGGCTAACTAAAGAAATAACTCAAACATCTTTATTTTCTGTATTTTCCGACCAACCA
GAACCGGGACCAGTATTCACATCTGCTGAGTGATCACTTTCTGCCATACCAAGTTTGGCT
TTCTGAACCCAAAGAGAGGAATTTGCACGATGCAAAGTGGGTTCCTAAGGAAGAAGGGCA
AGATGAGTGCCGTGAAATGAGTGAGGCTTCTATGGGAGGCCATGATGTGTATCTACGAGC
TGTGACTGGTCCAGGAGACCCAGCCCTCAGCAGGTGCCACAGAACCCAGAGCTAGACTTG
GAAGCCTATCAAGTTGATCTCTGTATACTTTGCTGCCGTTCTCAACAATGAAAAAGACAC
AGCCCCATCCTCTATGAGCTTATAGTCGCATGGGCTACAGATGGTAGTAAACAGAGTGCT
GACGGTGTGGGCCTGCAGAAGAGCAAGCTGATGAAAATAAAGACTGAGTTGCCAGCTCGT
ATGTGTCCTTATTTCCAAGGACAAACACAAACCCTGTCTCCGGGAGCTGCTTCTCTATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATAATTCTTATGGTCACAGGTGGTTTCCGTTTGTGCTGAACTAGGAATTGGAAGATGCA
TGTGGTTGTCTCCACTTGTTGCCTGGGATGATTCTTTTTGCCCTCTCTGGGTCTCTATTT
TCCTAGTAAAAGTATTTGTGCAGTTTGTGCAGAGGACTTTGTGGATCAAACGAAGTAAGT
AAAAACACTTGGGATACCCAAGCATGATACATATATAAATGGGTTGTATATTTCTAATTC
AGGTAGTAGAAGAAAACAAATGTGTACTAGAGAGATTTCGCGTAAAGTGACTGCTTGGGC
TGCAGGCTAACTAAAGAAATAACTCAAACATCTTTATTTTCTGTATTTTCCGACCAACCA
GAACCGGGACCAGTATTCACATCTGCTGAGTGATCACTTTCTGCCATACCAAGTTTGGCT
TTCTGAACCCAAAGAGAGGAATTTGCACGATGCAAAGTGGGTTCCTAAGGAAGAAGGGCA
AGATGAGTGCCGTGAAATGAGTGAGGCTTCTATGGGAGGCCATGATGTGTATCTACGAGC
TGTGACTGGTCCAGGAGACCCAGCCCTCAGCAGGTGCCACAGAACCCAGAGCTAGACTTG
GAAGCCTATCAAGTTGATCTCTGTATACTTTGCTGCCGTTCTCAACAATGAAAAAGACAC
AGCCCCATCCTCTATGAGCTTATAGTCGCATGGGCTACAGATGGTAGTAAACAGAGTGCT
GACGGTGTGGGCCTGCAGAAGAGCAAGCTGATGAAAATAAAGACTGAGTTGCCAGCTCGT
ATGTGTCCTTATTTCCAAGGACAAACACAAACCCTGTCTCCGGGAGCTGCTTCTCTATTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               711-840, - strand, RNAz p=0.997956

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               711-840, - strand, RNAz p=0.997956

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               2-413, gnl|bosTau2|chr9 (12709470-12709051)
               

               
               2-413, gnl|Hg17|chr6 (126401167-126401595)
               


               
               711-840, gnl|bosTau2|chr9 (12698539-12698408)
               

               
               711-840, gnl|Hg17|chr6 (126417382-126417513)
               

               
               711-840, gnl|Mm7|chr10 (30302646-30302495)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-413, gnl|bosTau2|chr9 (12709470-12709051)
               

               
               2-413, gnl|Hg17|chr6 (126401167-126401595)
               


               
               711-840, gnl|bosTau2|chr9 (12698539-12698408)
               

               
               711-840, gnl|Hg17|chr6 (126417382-126417513)
               

               
               711-840, gnl|Mm7|chr10 (30302646-30302495)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               thg (0.126791)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               thg (0.126791)

	2-413, gnl\|bosTau2\|chr9 (12709470-12709051)
	2-413, gnl\|Hg17\|chr6 (126401167-126401595)

	711-840, gnl\|bosTau2\|chr9 (12698539-12698408)
	711-840, gnl\|Hg17\|chr6 (126417382-126417513)
	711-840, gnl\|Mm7\|chr10 (30302646-30302495)