Non-Coding RNA Search

Ss1.1-rthg17_d20.5

Sequence:


               
               AAAAAAAAAAAAATTCATATCCAATTATGAGTCCTGCAATCAGTCATGTACATTCTTAAT
TTGCAAATAAATGAACTGATTTATTTTATTTCTGCCACCTCAGTCATGGAGAAAGTTAGG
GGCATTTCAAAGGTTAAAACATCTGAAAAATTATTAGCATTTAACAATGTTTACGTTTAC
ATTTGATTTGTTTCTCATGTGTTAGAGAAAAAGAATCATTAGCTGTCTTTGTTGTCTTTC
AAGAACTTAAGCCACTAGTAGCTCAAATGTAGTATCATTTTTCACTTTGAATTACTAGAA
TTTTCTTTAAAGAGGAGATAAAATATTGCCATTTCTCTTTCCAAATGGGTCAGTCAACTG
ATTAGAAAACCCAAAGCAAAGACAAACCAATTTTTAGATACTTCCTGGTCACTCAAATTT
AAGAATGGCAGCAGTGTCAGTTTTAAACACTTATAGATATTTCCCTATATAGAACATGGA
TTTTCATTCATTCCAATAATTCAAAGAAAACAATTTTCTCAAGTTTAAGTAAGATTTCTT
TTTCTGCTTGCTTAGGCAAAAGCACATTAACTTTCATGAAAACTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAATTCATATCCAATTATGAGTCCTGCAATCAGTCATGTACATTCTTAAT
TTGCAAATAAATGAACTGATTTATTTTATTTCTGCCACCTCAGTCATGGAGAAAGTTAGG
GGCATTTCAAAGGTTAAAACATCTGAAAAATTATTAGCATTTAACAATGTTTACGTTTAC
ATTTGATTTGTTTCTCATGTGTTAGAGAAAAAGAATCATTAGCTGTCTTTGTTGTCTTTC
AAGAACTTAAGCCACTAGTAGCTCAAATGTAGTATCATTTTTCACTTTGAATTACTAGAA
TTTTCTTTAAAGAGGAGATAAAATATTGCCATTTCTCTTTCCAAATGGGTCAGTCAACTG
ATTAGAAAACCCAAAGCAAAGACAAACCAATTTTTAGATACTTCCTGGTCACTCAAATTT
AAGAATGGCAGCAGTGTCAGTTTTAAACACTTATAGATATTTCCCTATATAGAACATGGA
TTTTCATTCATTCCAATAATTCAAAGAAAACAATTTTCTCAAGTTTAAGTAAGATTTCTT
TTTCTGCTTGCTTAGGCAAAAGCACATTAACTTTCATGAAAACTAAAA

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               6-588, gnl|bosTau2|chr7 (60024809-60024201)
               

               
               6-588, gnl|Hg17|chr5 (96455503-96454744)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-588, gnl|bosTau2|chr7 (60024809-60024201)
               

               
               6-588, gnl|Hg17|chr5 (96455503-96454744)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               thg (0.126791)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               thg (0.126791)

	6-588, gnl\|bosTau2\|chr7 (60024809-60024201)
	6-588, gnl\|Hg17\|chr5 (96455503-96454744)