Ss1.1-rthg17_d24.5
|
ATGTGAGGGTCCCTCTCAAGCCAAAAACCAGGACCTTTGCACAACTCCAGCGGGTCTCCG
CCCTCTGGGGACCCCCCCCACCCCCCCCCCCACTTGGGGGGCGGTGGGGCCAGGTGCTGA
GGGGAGCCTCTCTGTCCCCACCCATCACTTGCTCCCCCTCCCCTGTTGGGGGACCCCAGG
TTGGGCACTGGCCCGTTCACAAATACCTCGAGGGGGAGGGGAGGGATGGGGTTATAGCTG
TTTTGTTTAATGGGAACTGGAAGAGGGACCACGTCCTAATACGCACCCTTCCCAGGAACA
GGAAGGGGACCATGATCGCACTCCTGTACCGGCCACCGCCGCTGTCGTCACATCTTCACT
TCCCTTGAGAGTTTGGATAAATTCAGGTTGGGGCTGCAGGTATGCGGCCCTCAAGTGTCA
TAGTAAAGCAGTTCACCCATCTCTCCATTCAGAAGCGTGCAGTCTTAATGTACAGTGATG
AGAAACTGTTATTTTATGATCTTTTCATTAAAAGCTTGATTGAAAACT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATGTGAGGGTCCCTCTCAAGCCAAAAACCAGGACCTTTGCACAACTCCAGCGGGTCTCCG
CCCTCTGGGGACCCCCCCCACCCCCCCCCCCACTTGGGGGGCGGTGGGGCCAGGTGCTGA
GGGGAGCCTCTCTGTCCCCACCCATCACTTGCTCCCCCTCCCCTGTTGGGGGACCCCAGG
TTGGGCACTGGCCCGTTCACAAATACCTCGAGGGGGAGGGGAGGGATGGGGTTATAGCTG
TTTTGTTTAATGGGAACTGGAAGAGGGACCACGTCCTAATACGCACCCTTCCCAGGAACA
GGAAGGGGACCATGATCGCACTCCTGTACCGGCCACCGCCGCTGTCGTCACATCTTCACT
TCCCTTGAGAGTTTGGATAAATTCAGGTTGGGGCTGCAGGTATGCGGCCCTCAAGTGTCA
TAGTAAAGCAGTTCACCCATCTCTCCATTCAGAAGCGTGCAGTCTTAATGTACAGTGATG
AGAAACTGTTATTTTATGATCTTTTCATTAAAAGCTTGATTGAAAACT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
104-149, hz73e07.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE
(gb|BE467739.1|), blast E-value=0.00000000003, identity=97.83% |
|
104-149, hv83b12.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE
(gb|BE503810.1|), blast E-value=0.00000000003, identity=97.83% |
|
104-149, hv83h11.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE
(gb|BE503847.1|), blast E-value=0.00000000003, identity=97.83% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
104-149, hz73e07.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE
(gb|BE467739.1|), blast E-value=0.00000000003, identity=97.83% |
|
104-149, hv83b12.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE
(gb|BE503810.1|), blast E-value=0.00000000003, identity=97.83% |
|
104-149, hv83h11.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE
(gb|BE503847.1|), blast E-value=0.00000000003, identity=97.83% |
|
82-528, gnl|bosTau2|chr17 (45347181-45346740) |
|
82-528, gnl|canFam2|chr26 (33836579-33836275) |
|
82-528, gnl|dasNov1|scaffold_149672 (3845-4146) |
|
82-528, gnl|echTel1|scaffold_255533 (14151-13884) |
|
82-528, gnl|Hg17|chr22 (20129831-20130308) |
|
82-528, gnl|hg17|chr8 (98319959-98320263) |
|
82-528, gnl|mm7|chr16 (16812715-16812988) |
|
82-528, gnl|Mm7|chr16 (16812709-16813161) |
|
82-528, gnl|monDom2|scaffold_214 (342592-342301) |
|
82-528, gnl|oryCun1|scaffold_123555 (5215-5493) |
|
82-528, gnl|panTro1|chr7 (100585845-100586149) |
|
82-528, gnl|rheMac2|chr8 (99799503-99799808) |
|
82-528, gnl|rn3|chr11 (85779978-85779708) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
82-528, gnl|bosTau2|chr17 (45347181-45346740) |
|
82-528, gnl|canFam2|chr26 (33836579-33836275) |
|
82-528, gnl|dasNov1|scaffold_149672 (3845-4146) |
|
82-528, gnl|echTel1|scaffold_255533 (14151-13884) |
|
82-528, gnl|Hg17|chr22 (20129831-20130308) |
|
82-528, gnl|hg17|chr8 (98319959-98320263) |
|
82-528, gnl|mm7|chr16 (16812715-16812988) |
|
82-528, gnl|Mm7|chr16 (16812709-16813161) |
|
82-528, gnl|monDom2|scaffold_214 (342592-342301) |
|
82-528, gnl|oryCun1|scaffold_123555 (5215-5493) |
|
82-528, gnl|panTro1|chr7 (100585845-100586149) |
|
82-528, gnl|rheMac2|chr8 (99799503-99799808) |
|
82-528, gnl|rn3|chr11 (85779978-85779708) |
|
amn (0.417711) |
|
thg (0.126791) |
|
amn (0.417711) |
|
thg (0.126791) |
