Non-Coding RNA Search

Ss1.1-rthg17_g10.5

Sequence:


               
               ACTCCTTCCTCTCCCACTGGGAGCTGGCGGCGGCGGGCGAGGGGAGCGGCGCGAGGGGCG
AGGGCGGGCGGGGAGGGGGGCGGGAGACGGCGGGGGAGGGGCTCGGGTCGCCATGGACGA
CAAGGCGTTCACCAAGGAGCTGGACCAGTGGGTCGAGCAGCTGAACGAGTGTAAACAGCT
TAATGAGAACCAAGTGCGGACCCTATGCGAAAAGGCTAAGGAAATTCTAACAAAAGAATC
AAATGTGCAAGAGGTTCGTTGTCCAGTTACGGTCTGTGGAGATGTGCATGGTCAATTCCA
TGATCTTATGGAACTCTTTAGAATCGGTGGAAAATCACCAGACACAAACTATCTATTCAT
GGGTGACTATGTAGACAGAGGTTATTATTCGGTGGAGACTGTGACTCTTCTTGTGGCATT
AAAGGTGCGGTATCCAGAACGCATTACAATATTGAGAGGAAACCACGAGAGCCGACAAAT
TACCCAAGTATATGGCTTTTATGACGAATGTCTGCGGAAGTATGGAAATGCCAATGTTTG
GAAATATTTTACAGATCTATTTGATTATCTTCCACTTACAGCTTTAGTAGATGGACAGAT
ATTCTGCCTCCATGGTGGCCTCTCTCCATCCATAGATACACTGGATCATATAAGAGCCCT
GGATCGTTTACAAGAAGTGCCACATGAGGGCCCAATGTGTGATCTCTTATGGTCGGATCC
GGATGATCGTGGTGGGTGGGGCATCTCACCACGTGGTGCTGGCTACACATTTGGACAAGA
TATTTCTGAAACATTTAACCATGCCAATGGCCTCACACTGGTTTCTCGTGCTCACCAACT
GGTAATGGAGGGATACAACTGGTGTCATGACCGGAACGTTGTTACCATTTTCAGTGCACC
CAATTACTGTTATCGTTGTGGGAACCAGGCTGCTATCATGGAATTAGATGACACTTTGAA
ATATTCCTTCCTTCAATTTGACCCAGCACCTCGTCGTGGAGAGCCTCATGTGACCCGGCG
CACCCCAGACTACTTCCTGTAAATTCTTCCTGGGAAAACCTACCTTTATATGTGGAAGTA
TACCTGGCTTTTTAAAATATATATATTTCAAAACAAAACAAAAAGCAACAGTAATCTATG
TGTTTCTGTAGCACATTGGGATCTGTCTTGGCATTAAACCATATCATGGACCAAAATGTG
CCATACTAATCTAATGATGAGCATTTAGCACAATATGAGACTAAATTTTTAGTACAACAC
TATGTTCTAGATTCGTCGGTCTTAACAGTTTGCCTGCTGTATATGTAGTAACCATTTTTC
TTGGGACTGCTCAAACAAAAAAGGTAACTAATTCCATCTCCTTTTGCACTTACTTGGAAA
TTTTAGTTAGAGCGTTTAACTGGCATGGATTAATAGAGTTGGGTTTTTATTTTTAAGAAA
AATTCACAAGCTATCTTCCACTTAATTCATTACCCTTTATTTTATCGAAATGTGTAATTA
ACTGAAAAAAGGATTCTTCTTGGGAGTACGTTGTCATAACATATAGAGATTTCCCTTCAT
TTAAACTAAATTACTGTTTTATGTTGATCTGCATATTTCTGTATATTTGTCATGACAGTG
CTTGCATTCTATTTGGTGTATTGAGCAAATAAACTTTCCACTTTAAACAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCCTTCCTCTCCCACTGGGAGCTGGCGGCGGCGGGCGAGGGGAGCGGCGCGAGGGGCG
AGGGCGGGCGGGGAGGGGGGCGGGAGACGGCGGGGGAGGGGCTCGGGTCGCCATGGACGA
CAAGGCGTTCACCAAGGAGCTGGACCAGTGGGTCGAGCAGCTGAACGAGTGTAAACAGCT
TAATGAGAACCAAGTGCGGACCCTATGCGAAAAGGCTAAGGAAATTCTAACAAAAGAATC
AAATGTGCAAGAGGTTCGTTGTCCAGTTACGGTCTGTGGAGATGTGCATGGTCAATTCCA
TGATCTTATGGAACTCTTTAGAATCGGTGGAAAATCACCAGACACAAACTATCTATTCAT
GGGTGACTATGTAGACAGAGGTTATTATTCGGTGGAGACTGTGACTCTTCTTGTGGCATT
AAAGGTGCGGTATCCAGAACGCATTACAATATTGAGAGGAAACCACGAGAGCCGACAAAT
TACCCAAGTATATGGCTTTTATGACGAATGTCTGCGGAAGTATGGAAATGCCAATGTTTG
GAAATATTTTACAGATCTATTTGATTATCTTCCACTTACAGCTTTAGTAGATGGACAGAT
ATTCTGCCTCCATGGTGGCCTCTCTCCATCCATAGATACACTGGATCATATAAGAGCCCT
GGATCGTTTACAAGAAGTGCCACATGAGGGCCCAATGTGTGATCTCTTATGGTCGGATCC
GGATGATCGTGGTGGGTGGGGCATCTCACCACGTGGTGCTGGCTACACATTTGGACAAGA
TATTTCTGAAACATTTAACCATGCCAATGGCCTCACACTGGTTTCTCGTGCTCACCAACT
GGTAATGGAGGGATACAACTGGTGTCATGACCGGAACGTTGTTACCATTTTCAGTGCACC
CAATTACTGTTATCGTTGTGGGAACCAGGCTGCTATCATGGAATTAGATGACACTTTGAA
ATATTCCTTCCTTCAATTTGACCCAGCACCTCGTCGTGGAGAGCCTCATGTGACCCGGCG
CACCCCAGACTACTTCCTGTAAATTCTTCCTGGGAAAACCTACCTTTATATGTGGAAGTA
TACCTGGCTTTTTAAAATATATATATTTCAAAACAAAACAAAAAGCAACAGTAATCTATG
TGTTTCTGTAGCACATTGGGATCTGTCTTGGCATTAAACCATATCATGGACCAAAATGTG
CCATACTAATCTAATGATGAGCATTTAGCACAATATGAGACTAAATTTTTAGTACAACAC
TATGTTCTAGATTCGTCGGTCTTAACAGTTTGCCTGCTGTATATGTAGTAACCATTTTTC
TTGGGACTGCTCAAACAAAAAAGGTAACTAATTCCATCTCCTTTTGCACTTACTTGGAAA
TTTTAGTTAGAGCGTTTAACTGGCATGGATTAATAGAGTTGGGTTTTTATTTTTAAGAAA
AATTCACAAGCTATCTTCCACTTAATTCATTACCCTTTATTTTATCGAAATGTGTAATTA
ACTGAAAAAAGGATTCTTCTTGGGAGTACGTTGTCATAACATATAGAGATTTCCCTTCAT
TTAAACTAAATTACTGTTTTATGTTGATCTGCATATTTCTGTATATTTGTCATGACAGTG
CTTGCATTCTATTTGGTGTATTGAGCAAATAAACTTTCCACTTTAAACAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|8394021|ref|NP_058736.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|8394021|ref|NP_058736.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               600-718, - strand, RNAz p=0.85354

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               600-718, - strand, RNAz p=0.85354

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               26-1681, gnl|bosTau2|chr18 (45975671-45974028)
               

               
               26-1681, gnl|Hg17|chr16 (31724694-31726148)
               

               
               26-1681, gnl|Mm7|chr8 (32378519-32387668)
               


               
               1456-1673, gnl|bosTau2|chr13 (3539933-3540149)
               

               
               1456-1673, gnl|Hg17|chr8 (30762897-30762674)
               

               
               1456-1673, gnl|Mm7|chr8 (32387449-32387670)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-1681, gnl|bosTau2|chr18 (45975671-45974028)
               

               
               26-1681, gnl|Hg17|chr16 (31724694-31726148)
               

               
               26-1681, gnl|Mm7|chr8 (32378519-32387668)
               


               
               1456-1673, gnl|bosTau2|chr13 (3539933-3540149)
               

               
               1456-1673, gnl|Hg17|chr8 (30762897-30762674)
               

               
               1456-1673, gnl|Mm7|chr8 (32387449-32387670)

Expressed library(ies): 57 entry(ies)

More info

Expressed library(ies): 57 entry(ies)

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               fco (1.72929)
               

               
               lin (1.45603)
               

               
               ret (1.41607)
               

               
               bfe (1.19886)
               

               
               kid (1.03788)
               

               
               liv (1.02399)
               

               
               vin (0.997672)
               

               
               col (0.780031)
               

               
               sug (0.763747)
               

               
               isp (0.75188)
               

               
               spc (0.680195)
               

               
               mga (0.64082)
               

               
               cty (0.5204)
               

               
               rec (0.519211)
               

               
               cbe (0.478469)
               

               
               mgp (0.461361)
               

               
               amn (0.417711)
               

               
               tes (0.415628)
               

               
               ste (0.405625)
               

               
               lyg (0.399308)
               

               
               ova (0.387397)
               

               
               tra (0.369276)
               

               
               fbs (0.350693)
               

               
               eye (0.341006)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               hlv (0.278513)
               

               
               cbr (0.255951)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

Expressed library(ies): 57 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.72929)
               

               
               lin (1.45603)
               

               
               ret (1.41607)
               

               
               bfe (1.19886)
               

               
               kid (1.03788)
               

               
               liv (1.02399)
               

               
               vin (0.997672)
               

               
               col (0.780031)
               

               
               sug (0.763747)
               

               
               isp (0.75188)
               

               
               spc (0.680195)
               

               
               mga (0.64082)
               

               
               cty (0.5204)
               

               
               rec (0.519211)
               

               
               cbe (0.478469)
               

               
               mgp (0.461361)
               

               
               amn (0.417711)
               

               
               tes (0.415628)
               

               
               ste (0.405625)
               

               
               lyg (0.399308)
               

               
               ova (0.387397)
               

               
               tra (0.369276)
               

               
               fbs (0.350693)
               

               
               eye (0.341006)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               hlv (0.278513)
               

               
               cbr (0.255951)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

	26-1681, gnl\|bosTau2\|chr18 (45975671-45974028)
	26-1681, gnl\|Hg17\|chr16 (31724694-31726148)
	26-1681, gnl\|Mm7\|chr8 (32378519-32387668)

	1456-1673, gnl\|bosTau2\|chr13 (3539933-3540149)
	1456-1673, gnl\|Hg17\|chr8 (30762897-30762674)
	1456-1673, gnl\|Mm7\|chr8 (32387449-32387670)

	fco (1.72929)
	lin (1.45603)
	ret (1.41607)
	bfe (1.19886)
	kid (1.03788)
	liv (1.02399)
	vin (0.997672)
	col (0.780031)
	sug (0.763747)
	isp (0.75188)
	spc (0.680195)
	mga (0.64082)
	cty (0.5204)
	rec (0.519211)
	cbe (0.478469)
	mgp (0.461361)
	amn (0.417711)
	tes (0.415628)
	ste (0.405625)
	lyg (0.399308)
	ova (0.387397)
	tra (0.369276)
	fbs (0.350693)
	eye (0.341006)
	tbr (0.308356)
	fat (0.294855)
	hlv (0.278513)
	cbr (0.255951)
	thg (0.253582)
	bla (0.248694)
	ebs (0.236602)
	ece (0.229305)
	hea (0.204499)
	fcc (0.197785)
	eje (0.197668)
	aor (0.195274)
	cmu (0.186393)
	sag (0.182715)
	mgm (0.180343)
	gul (0.177588)
	ton (0.1755)
	mcp (0.170648)
	fhi (0.169578)
	lun (0.150489)
	ski (0.146735)
	hyp (0.142837)
	pty (0.142714)
	csk (0.140746)
	che (0.136314)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	ese (0.126502)
	pgl (0.118483)
	ecc (0.115035)
	cbl (0.114797)
	ldo (0.0970026)