Ss1.1-rthg17_k14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAAGAGCAATCCGTACTGTGAAATCAGCATGGGCTCCCAGAGCTACACCACCAGGACC CTCCAGGACACACTAAATCCCAAGTGGAATTTTAACTGCCAGTTCTTTATTAAGGATCTT TATCAGGATGTGCTGTGTCTTACCATGTTCGACAGAGACCAGTTTTCACCAGATGATTTC CTGGGTCGCACGGAAGTTCCAGTGGCAAAAATTCGAACAGAACAGGAACAAAGGCCCTAC AACTCGCCGACTCCTGCTGCACGAGGTCCCCACTGGGGAGGTCTGGGTCCGATTTGACCT ACAGCTTTTTGAGCAGAAAACTCTCCTGTAGGGGCCTTGGGGATCTGCCCACTAGGCTGG GCACTAGGCTGGCCTGGAGAGGACAGCTGGTGCTGCCCCTGAGCTGGAGGAGCGCCACAC GGCTTCATCCATCACAAGGCCACGCGCACTGGGGCCTCTATATTACTGCACACTAAATCG CTAGCAATCTATGCAAACATGATCTTTCCTATAAATAAACCAAACCCCATAGCACAGTGC CTTGTATTAGTGTTAACATGGTCGGCTGTGTTTAGATGCCTGGGTTTCCATTTTCAGGGC TATAAAAAGTATTACGTGGAAATGAGGCATCAGACCATCTGACGTTACCAGTTGGTTGAA TGTGTCCACTGTGGGTGGTTTGGGTGATGCTGTAACCATTCCACACCATGTGACCTCTGC TGGGTCACAGCCACTCAGGAGGAGAAGGACTGGGAAGAAATGCTGCAGGCTCAGCGTGGG AACAGCCTGATACCACAGTAGTGTCTACTTGTGCACTGAATAAAAAAACAGAAACTTGAT CATTTTATTGCTGATTAGATTTTGTCATTCTCTGCTGAGACAATATAGTTTGAAATCTAA GGGGGAAAGCTTGATTTATTTTACATACTGTGAACTCTAATGATGCGGAAAATATTTTGC AACTTTAATTTTCTGAAGTATAAATTATTTATGTAAATTCCTTGTTTTTGTGTATGTCAT AGGACATGCATCTTTAAGCTTTATCATTGCCAATATGTACAGAAAGAGAATAAAAATATA AGTTTATGAACG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAAGAGCAATCCGTACTGTGAAATCAGCATGGGCTCCCAGAGCTACACCACCAGGACC CTCCAGGACACACTAAATCCCAAGTGGAATTTTAACTGCCAGTTCTTTATTAAGGATCTT TATCAGGATGTGCTGTGTCTTACCATGTTCGACAGAGACCAGTTTTCACCAGATGATTTC CTGGGTCGCACGGAAGTTCCAGTGGCAAAAATTCGAACAGAACAGGAACAAAGGCCCTAC AACTCGCCGACTCCTGCTGCACGAGGTCCCCACTGGGGAGGTCTGGGTCCGATTTGACCT ACAGCTTTTTGAGCAGAAAACTCTCCTGTAGGGGCCTTGGGGATCTGCCCACTAGGCTGG GCACTAGGCTGGCCTGGAGAGGACAGCTGGTGCTGCCCCTGAGCTGGAGGAGCGCCACAC GGCTTCATCCATCACAAGGCCACGCGCACTGGGGCCTCTATATTACTGCACACTAAATCG CTAGCAATCTATGCAAACATGATCTTTCCTATAAATAAACCAAACCCCATAGCACAGTGC CTTGTATTAGTGTTAACATGGTCGGCTGTGTTTAGATGCCTGGGTTTCCATTTTCAGGGC TATAAAAAGTATTACGTGGAAATGAGGCATCAGACCATCTGACGTTACCAGTTGGTTGAA TGTGTCCACTGTGGGTGGTTTGGGTGATGCTGTAACCATTCCACACCATGTGACCTCTGC TGGGTCACAGCCACTCAGGAGGAGAAGGACTGGGAAGAAATGCTGCAGGCTCAGCGTGGG AACAGCCTGATACCACAGTAGTGTCTACTTGTGCACTGAATAAAAAAACAGAAACTTGAT CATTTTATTGCTGATTAGATTTTGTCATTCTCTGCTGAGACAATATAGTTTGAAATCTAA GGGGGAAAGCTTGATTTATTTTACATACTGTGAACTCTAATGATGCGGAAAATATTTTGC AACTTTAATTTTCTGAAGTATAAATTATTTATGTAAATTCCTTGTTTTTGTGTATGTCAT AGGACATGCATCTTTAAGCTTTATCATTGCCAATATGTACAGAAAGAGAATAAAAATATA AGTTTATGAACG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 566-755, + strand, RNAz p=0.796525 | |
| 567-682, + strand, RNAz p=0.647522 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 566-755, + strand, RNAz p=0.796525 | |
| 567-682, + strand, RNAz p=0.647522 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_019595, + |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-173, gnl|bosTau2|chr11 (56263656-56263828) | |
| 1-173, gnl|canFam2|chr17 (21610075-21610198) | |
| 1-173, gnl|danRer3|chr20 (27351883-27351764) | |
| 1-173, gnl|dasNov1|scaffold_37473 (13805-13928) | |
| 1-173, gnl|echTel1|scaffold_293599 (147254-147132) | |
| 1-173, gnl|fr1|chrUn (195202391-195202511) | |
| 1-173, gnl|galGal2|chr3 (102435805-102435927) | |
| 1-173, gnl|hg17|chr2 (24338759-24338881) | |
| 1-173, gnl|Hg17|chr2 (24338939-24338767) | |
| 1-173, gnl|loxAfr1|scaffold_7757 (60349-60472) | |
| 1-173, gnl|mm7|chr12 (4644904-4644782) | |
| 1-173, gnl|Mm7|chr12 (4644722-4644894) | |
| 1-173, gnl|monDom2|scaffold_29 (13820167-13820289) | |
| 1-173, gnl|oryCun1|scaffold_200093 (58107-58231) | |
| 1-173, gnl|panTro1|chr12 (25216715-25216837) | |
| 1-173, gnl|rheMac2|chr13 (24120142-24120264) | |
| 1-173, gnl|rn3|chrUn (42843675-42843797) | |
| 1-173, gnl|tetNig1|chr14 (6090578-6090456) | |
| 1-173, gnl|xenTro1|scaffold_497 (965490-965368) | |
| 175-1090, gnl|bosTau2|chr11 (56264294-56265196) | |
| 175-1090, gnl|canFam2|chr17 (21608700-21609395) | |
| 175-1090, gnl|echTel1|scaffold_315892 (48687-47973) | |
| 175-1090, gnl|galGal2|chr3 (102434030-102434802) | |
| 175-1090, gnl|hg17|chr2 (24337382-24338108) | |
| 175-1090, gnl|Hg17|chr2 (24338304-24337389) | |
| 175-1090, gnl|loxAfr1|scaffold_7757 (58848-59569) | |
| 175-1090, gnl|mm7|chr12 (4646211-4645494) | |
| 175-1090, gnl|Mm7|chr12 (4645295-4646203) | |
| 175-1090, gnl|oryCun1|scaffold_200093 (56503-57206) | |
| 175-1090, gnl|panTro1|chr12 (25215258-25215979) | |
| 175-1090, gnl|rheMac2|chr13 (24118770-24119487) | |
| 175-1090, gnl|rn3|chrUn (42842369-42843073) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-173, gnl|bosTau2|chr11 (56263656-56263828) | |
| 1-173, gnl|canFam2|chr17 (21610075-21610198) | |
| 1-173, gnl|danRer3|chr20 (27351883-27351764) | |
| 1-173, gnl|dasNov1|scaffold_37473 (13805-13928) | |
| 1-173, gnl|echTel1|scaffold_293599 (147254-147132) | |
| 1-173, gnl|fr1|chrUn (195202391-195202511) | |
| 1-173, gnl|galGal2|chr3 (102435805-102435927) | |
| 1-173, gnl|hg17|chr2 (24338759-24338881) | |
| 1-173, gnl|Hg17|chr2 (24338939-24338767) | |
| 1-173, gnl|loxAfr1|scaffold_7757 (60349-60472) | |
| 1-173, gnl|mm7|chr12 (4644904-4644782) | |
| 1-173, gnl|Mm7|chr12 (4644722-4644894) | |
| 1-173, gnl|monDom2|scaffold_29 (13820167-13820289) | |
| 1-173, gnl|oryCun1|scaffold_200093 (58107-58231) | |
| 1-173, gnl|panTro1|chr12 (25216715-25216837) | |
| 1-173, gnl|rheMac2|chr13 (24120142-24120264) | |
| 1-173, gnl|rn3|chrUn (42843675-42843797) | |
| 1-173, gnl|tetNig1|chr14 (6090578-6090456) | |
| 1-173, gnl|xenTro1|scaffold_497 (965490-965368) | |
| 175-1090, gnl|bosTau2|chr11 (56264294-56265196) | |
| 175-1090, gnl|canFam2|chr17 (21608700-21609395) | |
| 175-1090, gnl|echTel1|scaffold_315892 (48687-47973) | |
| 175-1090, gnl|galGal2|chr3 (102434030-102434802) | |
| 175-1090, gnl|hg17|chr2 (24337382-24338108) | |
| 175-1090, gnl|Hg17|chr2 (24338304-24337389) | |
| 175-1090, gnl|loxAfr1|scaffold_7757 (58848-59569) | |
| 175-1090, gnl|mm7|chr12 (4646211-4645494) | |
| 175-1090, gnl|Mm7|chr12 (4645295-4646203) | |
| 175-1090, gnl|oryCun1|scaffold_200093 (56503-57206) | |
| 175-1090, gnl|panTro1|chr12 (25215258-25215979) | |
| 175-1090, gnl|rheMac2|chr13 (24118770-24119487) | |
| 175-1090, gnl|rn3|chrUn (42842369-42843073) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| thg (1.14112) | |
| cmu (0.55918) | |
| sag (0.36543) | |
| fce (0.271592) | |
| aor (0.195274) | |
| col (0.195008) | |
| gul (0.177588) | |
| cki (0.165235) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| cst (0.140036) | |
| bla (0.124347) | |
| nbm (0.0993246) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (1.14112) | |
| cmu (0.55918) | |
| sag (0.36543) | |
| fce (0.271592) | |
| aor (0.195274) | |
| col (0.195008) | |
| gul (0.177588) | |
| cki (0.165235) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| cst (0.140036) | |
| bla (0.124347) | |
| nbm (0.0993246) |