Ss1.1-rthg17_k5.5
|
ATGTAAATAGTGTTTCTAAATTATATTTCAATGAGATTTTATAGGCACAAATTATCATTT
AATATAATTAATAAAGGGTAGTATTTACCATTCTTGGATTCCCTTTTCTTTAAGAAACAA
TATATAAAACTATTAAAAATCTATTCACCTAAGATACCTGTTGAAATTTTGTTTAGGTAT
CTGGCCAGGAACAGTCTTCACGGGGACAAAGAATTTTATCTATTCCAATTTGGCCCCCAA
ACCTAGGTATCTCACAGAACTGTGTGTATGAGGTACAACAGGTACCCAAAGTAGAAAAGA
CAGGCAGTGATCTGACACAGACACAGGTGGACAAAACAGAGGTCCTAGTAACAGATGAAA
AATTATCTTCAAATTTACAGCACCATTTTAGCTTGTCATCTGTTTATTCACATTACTTTC
CTGAGACTGGAATTCCAGAAGTGACCACTTGTCATTCCCGAAGTGCCATCACTGTGGATT
ATATTTTCTATTCTGCAGAAAAGGAAGGTGTTGCTGGGCAGCAAGGAGCTGGAGTTGCGT
TGGTTGGTGGTTTGAAACTTCTAGCTAGACTGTCCCTTCTCACAGAACAAGACTTATGGA
CTGTTAATGGACTTCCAAATGAAAATAACTCTTCCGATCATCTGCCTTTACTGGCTAAGT
TCAGACTTGACCTCTGACTCTTCTTTGATGATGTATATACTTTGCTTTCTCATTTTTATT
CTTTTTCAAATGATGTAAAGTTGTTCTTAAGAGTTTGCATGTTATTTATTTTTACGCTGT
GGAATTTCTGAAGAGGTTATGTTAAATGCTTGAAACAGCCGAAGAGACAAGTTTACAACA
GTTTTCTTTTTTAATAATGAAAAAAATATTTTCCTGACAAGTGAGATCTAATTGCTCTTG
ATTGTAAAAGAATTGTAAATATTCTAAACTCCAGTAAAACTGACAGTGATTTTTAAAAAC |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATGTAAATAGTGTTTCTAAATTATATTTCAATGAGATTTTATAGGCACAAATTATCATTT
AATATAATTAATAAAGGGTAGTATTTACCATTCTTGGATTCCCTTTTCTTTAAGAAACAA
TATATAAAACTATTAAAAATCTATTCACCTAAGATACCTGTTGAAATTTTGTTTAGGTAT
CTGGCCAGGAACAGTCTTCACGGGGACAAAGAATTTTATCTATTCCAATTTGGCCCCCAA
ACCTAGGTATCTCACAGAACTGTGTGTATGAGGTACAACAGGTACCCAAAGTAGAAAAGA
CAGGCAGTGATCTGACACAGACACAGGTGGACAAAACAGAGGTCCTAGTAACAGATGAAA
AATTATCTTCAAATTTACAGCACCATTTTAGCTTGTCATCTGTTTATTCACATTACTTTC
CTGAGACTGGAATTCCAGAAGTGACCACTTGTCATTCCCGAAGTGCCATCACTGTGGATT
ATATTTTCTATTCTGCAGAAAAGGAAGGTGTTGCTGGGCAGCAAGGAGCTGGAGTTGCGT
TGGTTGGTGGTTTGAAACTTCTAGCTAGACTGTCCCTTCTCACAGAACAAGACTTATGGA
CTGTTAATGGACTTCCAAATGAAAATAACTCTTCCGATCATCTGCCTTTACTGGCTAAGT
TCAGACTTGACCTCTGACTCTTCTTTGATGATGTATATACTTTGCTTTCTCATTTTTATT
CTTTTTCAAATGATGTAAAGTTGTTCTTAAGAGTTTGCATGTTATTTATTTTTACGCTGT
GGAATTTCTGAAGAGGTTATGTTAAATGCTTGAAACAGCCGAAGAGACAAGTTTACAACA
GTTTTCTTTTTTAATAATGAAAAAAATATTTTCCTGACAAGTGAGATCTAATTGCTCTTG
ATTGTAAAAGAATTGTAAATATTCTAAACTCCAGTAAAACTGACAGTGATTTTTAAAAAC |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
6-304, gnl|bosTau2|chr16 (52655206-52655501) |
|
6-304, gnl|Hg17|chr1 (209562836-209562522) |
|
6-304, gnl|Mm7|chr1 (190495487-190495754) |
| |
|
363-526, gnl|bosTau2|chr16 (52657854-52658017) |
|
363-526, gnl|canFam2|chr7 (14075735-14075883) |
|
363-526, gnl|danRer3|chr17 (49304511-49304640) |
|
363-526, gnl|echTel1|scaffold_314336 (151993-152141) |
|
363-526, gnl|fr1|chrUn (154754309-154754194) |
|
363-526, gnl|galGal2|chr3 (18079342-18079194) |
|
363-526, gnl|hg17|chr1 (209558891-209559039) |
|
363-526, gnl|Hg17|chr1 (209559054-209558891) |
|
363-526, gnl|loxAfr1|scaffold_5931 (51444-51592) |
|
363-526, gnl|mm7|chr1 (190497449-190497301) |
|
363-526, gnl|Mm7|chr1 (190497284-190497447) |
|
363-526, gnl|monDom2|scaffold_13 (17107882-17108030) |
|
363-526, gnl|oryCun1|scaffold_173838 (9790-9642) |
|
363-526, gnl|panTro1|chr1 (193210537-193210685) |
|
363-526, gnl|rheMac2|chr1 (157444647-157444499) |
|
363-526, gnl|rn3|chr13 (107216253-107216105) |
|
363-526, gnl|tetNig1|chr10 (4552947-4553039) |
|
363-526, gnl|xenTro1|scaffold_68 (1070242-1070094) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
6-304, gnl|bosTau2|chr16 (52655206-52655501) |
|
6-304, gnl|Hg17|chr1 (209562836-209562522) |
|
6-304, gnl|Mm7|chr1 (190495487-190495754) |
| |
|
363-526, gnl|bosTau2|chr16 (52657854-52658017) |
|
363-526, gnl|canFam2|chr7 (14075735-14075883) |
|
363-526, gnl|danRer3|chr17 (49304511-49304640) |
|
363-526, gnl|echTel1|scaffold_314336 (151993-152141) |
|
363-526, gnl|fr1|chrUn (154754309-154754194) |
|
363-526, gnl|galGal2|chr3 (18079342-18079194) |
|
363-526, gnl|hg17|chr1 (209558891-209559039) |
|
363-526, gnl|Hg17|chr1 (209559054-209558891) |
|
363-526, gnl|loxAfr1|scaffold_5931 (51444-51592) |
|
363-526, gnl|mm7|chr1 (190497449-190497301) |
|
363-526, gnl|Mm7|chr1 (190497284-190497447) |
|
363-526, gnl|monDom2|scaffold_13 (17107882-17108030) |
|
363-526, gnl|oryCun1|scaffold_173838 (9790-9642) |
|
363-526, gnl|panTro1|chr1 (193210537-193210685) |
|
363-526, gnl|rheMac2|chr1 (157444647-157444499) |
|
363-526, gnl|rn3|chr13 (107216253-107216105) |
|
363-526, gnl|tetNig1|chr10 (4552947-4553039) |
|
363-526, gnl|xenTro1|scaffold_68 (1070242-1070094) |
|
amn (0.417711) |
|
thg (0.380373) |
|
fco (0.314416) |
|
liv (0.292569) |
|
lin (0.291206) |
|
spl (0.286369) |
|
fce (0.271592) |
|
kid (0.259471) |
|
ova (0.258264) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
mgp (0.230681) |
|
spc (0.226732) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
gul (0.177588) |
|
sin (0.174948) |
|
sug (0.127291) |
|
tra (0.123092) |
|
amn (0.417711) |
|
thg (0.380373) |
|
fco (0.314416) |
|
liv (0.292569) |
|
lin (0.291206) |
|
spl (0.286369) |
|
fce (0.271592) |
|
kid (0.259471) |
|
ova (0.258264) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
mgp (0.230681) |
|
spc (0.226732) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
gul (0.177588) |
|
sin (0.174948) |
|
sug (0.127291) |
|
tra (0.123092) |
