Non-Coding RNA Search

Ss1.1-rthg17_o14.5

Sequence:


               
               AAAAAAAAAAAAAAAAAAAAAAAAAAACTGTCCCACATGGAAGTGACTTTCATAGCTACA
AACTGATTCCAATGACATTGAGCTAATTTCTTTTGATCTAATGAATGTATCTGCTCACCT
TGTTCTTTTACTTCTAATTGATAAGCTCCAAGTATTTGTTACTTTTTGTGGACATTTTTT
TACTGAGTTTCATACATTTCTTTTACTTTGTCTTTTAATGAATATACCACAGTTATTTCA
TTAACATGTTCTCAAGTGGTTTATCTACCATTCTGCCATTTTTTAAATTTAATTTTATTT
GCTTGAGCACACTGATCAACCACTGAACTGCCTTCTTCCATTGTTCTGCAGTGATATAAG
GGTTACATTTTTGTGTATATGGCTTTCATAGTTGGGATTTCAGAGCACTGACACCAGATA
TTTTCAGTTTGTTCTCTGGGGGAATTTCATTTGCATCTATGTTTTTAGCTATCTGTGATA
ACTTGTTAAATATTAAAAAGATATTTTGCTTCTATTGGAACATTTGTATACTCGCAACTA
TATTTCTGTAAACAGCTGCAGTCAAAAATAAAACATTGAAAGTTTTCAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAAAAAAAAAAAAAAAACTGTCCCACATGGAAGTGACTTTCATAGCTACA
AACTGATTCCAATGACATTGAGCTAATTTCTTTTGATCTAATGAATGTATCTGCTCACCT
TGTTCTTTTACTTCTAATTGATAAGCTCCAAGTATTTGTTACTTTTTGTGGACATTTTTT
TACTGAGTTTCATACATTTCTTTTACTTTGTCTTTTAATGAATATACCACAGTTATTTCA
TTAACATGTTCTCAAGTGGTTTATCTACCATTCTGCCATTTTTTAAATTTAATTTTATTT
GCTTGAGCACACTGATCAACCACTGAACTGCCTTCTTCCATTGTTCTGCAGTGATATAAG
GGTTACATTTTTGTGTATATGGCTTTCATAGTTGGGATTTCAGAGCACTGACACCAGATA
TTTTCAGTTTGTTCTCTGGGGGAATTTCATTTGCATCTATGTTTTTAGCTATCTGTGATA
ACTTGTTAAATATTAAAAAGATATTTTGCTTCTATTGGAACATTTGTATACTCGCAACTA
TATTTCTGTAAACAGCTGCAGTCAAAAATAAAACATTGAAAGTTTTCAAAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               44-588, gnl|bosTau2|chr18 (30319603-30320143)
               

               
               44-588, gnl|Hg17|chr16 (68295519-68296058)
               

               
               44-588, gnl|Mm7|chr8 (105979122-105979653)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-588, gnl|bosTau2|chr18 (30319603-30320143)
               

               
               44-588, gnl|Hg17|chr16 (68295519-68296058)
               

               
               44-588, gnl|Mm7|chr8 (105979122-105979653)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               amn (0.835422)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               lyg (0.266205)
               

               
               mgp (0.230681)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.835422)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               lyg (0.266205)
               

               
               mgp (0.230681)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	44-588, gnl\|bosTau2\|chr18 (30319603-30320143)
	44-588, gnl\|Hg17\|chr16 (68295519-68296058)
	44-588, gnl\|Mm7\|chr8 (105979122-105979653)

	amn (0.835422)
	sag (0.36543)
	gul (0.355177)
	rec (0.346141)
	lyg (0.266205)
	mgp (0.230681)
	fbs (0.175346)
	cki (0.165235)
	fco (0.157208)
	isp (0.150376)
	fat (0.147427)
	spl (0.143184)
	lnt (0.142308)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	tra (0.123092)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)