Ss1.1-rthg18_e15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGGAAATTGAGTAGATTTTGAGGCCTTTCTTCCAGAAAACAAGGACTCAATTGTCAGA ACCTATATTAGGTTCCTAACTTTAATGCCATGTATTTGTACTTACTAAAATTGTTACATT GAAAAGTATATTAGAAATATGAACTTCTAGTCTAGTTGGAAGTTCTTCCATTTTAAAAAT GTGATATATGCATGGGACTGTTTGAATCTTTTTGTTTTCTCAGTTTCCCCTCCACTGGAT AGGATTGAAGCTAGAATTTTCCCTTTCGATAAGTAAAAAGTGAACATGTTATTTGTGAAT TGATGTTTAGTGTTAGAGTTGGAAGTATTTAGAATATATTTTAAGCCTATTCCTCGGTAG CCTTATAAAAAGATATCTCTTAAGTATCTTTTGCACCTATATTCACATTGGTTTTCAAGA TATTTTAAGTTATATTTTTTTCCTCTTTTCAGAGTTGCTTCTCTGGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGGAAATTGAGTAGATTTTGAGGCCTTTCTTCCAGAAAACAAGGACTCAATTGTCAGA ACCTATATTAGGTTCCTAACTTTAATGCCATGTATTTGTACTTACTAAAATTGTTACATT GAAAAGTATATTAGAAATATGAACTTCTAGTCTAGTTGGAAGTTCTTCCATTTTAAAAAT GTGATATATGCATGGGACTGTTTGAATCTTTTTGTTTTCTCAGTTTCCCCTCCACTGGAT AGGATTGAAGCTAGAATTTTCCCTTTCGATAAGTAAAAAGTGAACATGTTATTTGTGAAT TGATGTTTAGTGTTAGAGTTGGAAGTATTTAGAATATATTTTAAGCCTATTCCTCGGTAG CCTTATAAAAAGATATCTCTTAAGTATCTTTTGCACCTATATTCACATTGGTTTTCAAGA TATTTTAAGTTATATTTTTTTCCTCTTTTCAGAGTTGCTTCTCTGGGA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 121-213, - strand, RNAz p=0.549412 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 121-213, - strand, RNAz p=0.549412 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 111-209, + strand, RNAmicro p=0.989432 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 2-467, gnl|bosTau2|chr6 (39404497-39404024) | |
| 2-467, gnl|canFam2|chr13 (51991670-51992271) | |
| 2-467, gnl|canFam2|chr14 (37282463-37281985) | |
| 2-467, gnl|dasNov1|scaffold_48144 (10924-10455) | |
| 2-467, gnl|dasNov1|scaffold_58072 (7744-7175) | |
| 2-467, gnl|echTel1|scaffold_318344 (120957-120473) | |
| 2-467, gnl|echTel1|scaffold_318344 (121094-120527) | |
| 2-467, gnl|galGal2|chr4 (49771945-49771323) | |
| 2-467, gnl|hg17|chr4 (97046189-97046677) | |
| 2-467, gnl|hg17|chr4 (57641455-57642057) | |
| 2-467, gnl|Hg17|chr4 (57641582-57642062) | |
| 2-467, gnl|loxAfr1|scaffold_8772 (88339-87835) | |
| 2-467, gnl|loxAfr1|scaffold_8772 (88530-87899) | |
| 2-467, gnl|mm7|chr2 (132132824-132132351) | |
| 2-467, gnl|mm7|chr5 (77216395-77216978) | |
| 2-467, gnl|Mm7|chr5 (77216509-77216983) | |
| 2-467, gnl|monDom2|scaffold_26 (20827541-20828166) | |
| 2-467, gnl|oryCun1|scaffold_120630 (18263-18748) | |
| 2-467, gnl|oryCun1|scaffold_120630 (18102-18693) | |
| 2-467, gnl|panTro1|chr3 (113356798-113357283) | |
| 2-467, gnl|panTro1|chr3 (88984098-88983496) | |
| 2-467, gnl|rheMac2|chr5 (72442323-72441846) | |
| 2-467, gnl|rheMac2|chr5 (72442490-72441893) | |
| 2-467, gnl|rn3|chr1 (37366823-37366364) | |
| 2-467, gnl|rn3|chr14 (33134002-33133425) | |
| 83-465, gnl|bosTau2|chr2 (17204109-17204499) | |
| 83-465, gnl|Hg17|chr4 (57641660-57642060) | |
| 83-465, gnl|Mm7|chr5 (77216571-77216981) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-467, gnl|bosTau2|chr6 (39404497-39404024) | |
| 2-467, gnl|canFam2|chr13 (51991670-51992271) | |
| 2-467, gnl|canFam2|chr14 (37282463-37281985) | |
| 2-467, gnl|dasNov1|scaffold_48144 (10924-10455) | |
| 2-467, gnl|dasNov1|scaffold_58072 (7744-7175) | |
| 2-467, gnl|echTel1|scaffold_318344 (120957-120473) | |
| 2-467, gnl|echTel1|scaffold_318344 (121094-120527) | |
| 2-467, gnl|galGal2|chr4 (49771945-49771323) | |
| 2-467, gnl|hg17|chr4 (97046189-97046677) | |
| 2-467, gnl|hg17|chr4 (57641455-57642057) | |
| 2-467, gnl|Hg17|chr4 (57641582-57642062) | |
| 2-467, gnl|loxAfr1|scaffold_8772 (88339-87835) | |
| 2-467, gnl|loxAfr1|scaffold_8772 (88530-87899) | |
| 2-467, gnl|mm7|chr2 (132132824-132132351) | |
| 2-467, gnl|mm7|chr5 (77216395-77216978) | |
| 2-467, gnl|Mm7|chr5 (77216509-77216983) | |
| 2-467, gnl|monDom2|scaffold_26 (20827541-20828166) | |
| 2-467, gnl|oryCun1|scaffold_120630 (18263-18748) | |
| 2-467, gnl|oryCun1|scaffold_120630 (18102-18693) | |
| 2-467, gnl|panTro1|chr3 (113356798-113357283) | |
| 2-467, gnl|panTro1|chr3 (88984098-88983496) | |
| 2-467, gnl|rheMac2|chr5 (72442323-72441846) | |
| 2-467, gnl|rheMac2|chr5 (72442490-72441893) | |
| 2-467, gnl|rn3|chr1 (37366823-37366364) | |
| 2-467, gnl|rn3|chr14 (33134002-33133425) | |
| 83-465, gnl|bosTau2|chr2 (17204109-17204499) | |
| 83-465, gnl|Hg17|chr4 (57641660-57642060) | |
| 83-465, gnl|Mm7|chr5 (77216571-77216981) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.126791) |