Non-Coding RNA Search

Ss1.1-rthg18_e3.5.5

Sequence:


               
               CGGTTGTGGTTTGTCAGCTCCCCGCCCCCCTCAAAGAGCTGCAGCTGGGAATCATAGCCC
ATCGGCTGGGGGCTGCGATGGGGGGGACACCGCTTGAGTTCCTTCGCGCTTCATTCCTTC
TGATTTTGGCACCTCCACGTGTGCAGCCTCTCCCAGAGTACTTGAAGTCATTTTTAGATG
CTTTATTTTATTTTTATAGTCAAAATGTTTTGGTCCCCCTGTATTTGAAAGCCTTCAGAG
CCTTTTCAGTATTTTCAGTGAATACTATGGTACTTCTGTACTTGTTTTAGCCCAGAGCTC
ACTGCTCCAAAACAGAGAGCCTTAATCTCTATCTTGGGACACAGACCACACATTTGGCTG
GCAGCCACTGCATCCATCTCCCCAGGGCTTTGGACTTGAATGTGTACTTCTGATGATCTC
TGCTGCCACACCAAAACGGAGTGGAATTTCCTAAAGGAACTGCTACCCTAAGGTAATCTA
TCTGAGATTAAAATATAAACATTTATTTTTCTTACATAAATTTATAAAGTATTTTATGTT
TAACGCCTAATTTCTAGAAAGTGCCAGATAAAAATGTATATTAACTACTTTGATTTTTAT
GTACAATGATTTATATTGTCATTTTGAAAAGACACCATAAAGCACATAAGCTGGATAATT
TCAAGTGGCTGTTACCTTTTTTTCTTACCAAGTGTTTAAAACATGGAAAGTTTTTAAAGA
CTCAGTTTTTCAAATGGTACTTGGAGCCTCCTGGTCAAAATCGTCTGGCTCCTTGAAGAA
ATAAGTGGAATAAACATAAATGATGATTTTCAGTGGTTTGTGGTGGGCAATATTGAAATG
TTTGAAACAGTAAAAATGGAAAGAGGAACAGGGATGACTAGGGCTGACTGTGAATGTTTA
CCCTCATGAAGGTATTATAATTCCATTAAGTTTGAGCCACATTTTTAAGAAAAAGATGAT
GAATTCTGCAGCCCAGTGCTTGCAAATGTAAATTGCCTATTGGGAATTTTTTCTTTCCCT
TCATTTTACAAAAATTCGTGGCTGAAATCACTCAGATTAAGAGCTCAGCCTGGTTTGAAT
TGAATCATCTCTTTAGATTTTCTAAAGCCAACATTGGGAAACTTGTTCACTTTTGATTTC
CAAAGGAACCTGCTTGAAGTGCTATTATGCCGTGTGGGCTTCAGAAAAGGAGCTTTTCCT
TCACCGATAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTTGTGGTTTGTCAGCTCCCCGCCCCCCTCAAAGAGCTGCAGCTGGGAATCATAGCCC
ATCGGCTGGGGGCTGCGATGGGGGGGACACCGCTTGAGTTCCTTCGCGCTTCATTCCTTC
TGATTTTGGCACCTCCACGTGTGCAGCCTCTCCCAGAGTACTTGAAGTCATTTTTAGATG
CTTTATTTTATTTTTATAGTCAAAATGTTTTGGTCCCCCTGTATTTGAAAGCCTTCAGAG
CCTTTTCAGTATTTTCAGTGAATACTATGGTACTTCTGTACTTGTTTTAGCCCAGAGCTC
ACTGCTCCAAAACAGAGAGCCTTAATCTCTATCTTGGGACACAGACCACACATTTGGCTG
GCAGCCACTGCATCCATCTCCCCAGGGCTTTGGACTTGAATGTGTACTTCTGATGATCTC
TGCTGCCACACCAAAACGGAGTGGAATTTCCTAAAGGAACTGCTACCCTAAGGTAATCTA
TCTGAGATTAAAATATAAACATTTATTTTTCTTACATAAATTTATAAAGTATTTTATGTT
TAACGCCTAATTTCTAGAAAGTGCCAGATAAAAATGTATATTAACTACTTTGATTTTTAT
GTACAATGATTTATATTGTCATTTTGAAAAGACACCATAAAGCACATAAGCTGGATAATT
TCAAGTGGCTGTTACCTTTTTTTCTTACCAAGTGTTTAAAACATGGAAAGTTTTTAAAGA
CTCAGTTTTTCAAATGGTACTTGGAGCCTCCTGGTCAAAATCGTCTGGCTCCTTGAAGAA
ATAAGTGGAATAAACATAAATGATGATTTTCAGTGGTTTGTGGTGGGCAATATTGAAATG
TTTGAAACAGTAAAAATGGAAAGAGGAACAGGGATGACTAGGGCTGACTGTGAATGTTTA
CCCTCATGAAGGTATTATAATTCCATTAAGTTTGAGCCACATTTTTAAGAAAAAGATGAT
GAATTCTGCAGCCCAGTGCTTGCAAATGTAAATTGCCTATTGGGAATTTTTTCTTTCCCT
TCATTTTACAAAAATTCGTGGCTGAAATCACTCAGATTAAGAGCTCAGCCTGGTTTGAAT
TGAATCATCTCTTTAGATTTTCTAAAGCCAACATTGGGAAACTTGTTCACTTTTGATTTC
CAAAGGAACCTGCTTGAAGTGCTATTATGCCGTGTGGGCTTCAGAAAAGGAGCTTTTCCT
TCACCGATAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               991-1110, - strand, RNAz p=0.993665

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               991-1110, - strand, RNAz p=0.993665

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-1204, gnl|bosTau2|chr14 (25200019-25198853)
               

               
               13-1204, gnl|Hg17|chr8 (82050775-82049590)
               

               
               13-1204, gnl|Mm7|chr3 (9699373-9698375)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-1204, gnl|bosTau2|chr14 (25200019-25198853)
               

               
               13-1204, gnl|Hg17|chr8 (82050775-82049590)
               

               
               13-1204, gnl|Mm7|chr3 (9699373-9698375)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	13-1204, gnl\|bosTau2\|chr14 (25200019-25198853)
	13-1204, gnl\|Hg17\|chr8 (82050775-82049590)
	13-1204, gnl\|Mm7\|chr3 (9699373-9698375)