Non-Coding RNA Search

Ss1.1-rthg18_i16.5

Sequence:


               
               GAGAAATCAGTATTATATCAGCTACTCTGTAAGACAGCAACTGATAGCTACTAATTGAAC
AGAAGTGGTTGTCTTGGATTTTCTATATGTTTCTGAGAAGTCTGAATGGAGAGAATATAG
CTCTTATGCTTCAGATTTTAAACAAAAGGATTTGCTCTGGGTGTTACATAGAGTACATAA
AAGGAGTCTACTTCAGTTTGAATCCTATCTCTTTTAACTAGATGGGTGATCTTGGACAAC
TTCTCCTCAGCCTCATTTTTTTTTTTTTTTTCTGTCTGTAAAATGGGGTTTGCTTTGAAG
CATAAAGGAGATAATTCCCATAAATAATTTAGCATTGTACCTACTACTTAAAAGTGCTCA
AATCTTAGCTGTTATTAGTTTAATATAAAAATGCCAATAAATGGTCTTTCAAAATGTTTA
CCCTACATGTTTTTTCTCTTTTAGCCAAATGATTTCTCTGTATCACTAAAAGCACAAGGG
AAAAACAAGCATTTTAAAGTCCAACTAAAGGAGACTCTCTACTGCATTGGGCAGCGTAAA
TTCAGCACGATGGAAGAACTTGTAGAACATTACAAAAAGGCACCAATTTTTACAAGTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAATCAGTATTATATCAGCTACTCTGTAAGACAGCAACTGATAGCTACTAATTGAAC
AGAAGTGGTTGTCTTGGATTTTCTATATGTTTCTGAGAAGTCTGAATGGAGAGAATATAG
CTCTTATGCTTCAGATTTTAAACAAAAGGATTTGCTCTGGGTGTTACATAGAGTACATAA
AAGGAGTCTACTTCAGTTTGAATCCTATCTCTTTTAACTAGATGGGTGATCTTGGACAAC
TTCTCCTCAGCCTCATTTTTTTTTTTTTTTTCTGTCTGTAAAATGGGGTTTGCTTTGAAG
CATAAAGGAGATAATTCCCATAAATAATTTAGCATTGTACCTACTACTTAAAAGTGCTCA
AATCTTAGCTGTTATTAGTTTAATATAAAAATGCCAATAAATGGTCTTTCAAAATGTTTA
CCCTACATGTTTTTTCTCTTTTAGCCAAATGATTTCTCTGTATCACTAAAAGCACAAGGG
AAAAACAAGCATTTTAAAGTCCAACTAAAGGAGACTCTCTACTGCATTGGGCAGCGTAAA
TTCAGCACGATGGAAGAACTTGTAGAACATTACAAAAAGGCACCAATTTTTACAAGTGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62738898|pdb|1Z3K|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62738898|pdb|1Z3K|A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               443-534, + strand, RNAz p=0.741624

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               443-534, + strand, RNAz p=0.741624

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               41-600, gnl|bosTau2|chr1 (85318169-85317638)
               

               
               41-600, gnl|Hg17|chr3 (138149380-138149954)
               


               
               443-599, gnl|bosTau2|chr11 (36966770-36966926)
               

               
               443-599, gnl|canFam2|chr10 (40709035-40708866)
               

               
               443-599, gnl|danRer3|chr9 (10939823-10939656)
               

               
               443-599, gnl|dasNov1|scaffold_9856 (20308-20474)
               

               
               443-599, gnl|echTel1|scaffold_221408 (5265-5416)
               

               
               443-599, gnl|fr1|chrUn (283589376-283589233)
               

               
               443-599, gnl|galGal2|chr1 (128473721-128473899)
               

               
               443-599, gnl|hg17|chr2 (105967930-105968097)
               

               
               443-599, gnl|Hg17|chr2 (105967954-105968110)
               

               
               443-599, gnl|loxAfr1|scaffold_18854 (11526-11677)
               

               
               443-599, gnl|mm7|chr1 (43809508-43809676)
               

               
               443-599, gnl|Mm7|chr1 (43809533-43809689)
               

               
               443-599, gnl|monDom2|scaffold_11 (24981297-24981477)
               

               
               443-599, gnl|oryCun1|scaffold_126239 (6744-6587)
               

               
               443-599, gnl|rheMac2|chr13 (105772127-105772294)
               

               
               443-599, gnl|rn3|chr9 (42777018-42777186)
               

               
               443-599, gnl|tetNig1|chr2 (9051727-9051879)
               

               
               443-599, gnl|xenTro1|scaffold_1892 (16263-16424)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-600, gnl|bosTau2|chr1 (85318169-85317638)
               

               
               41-600, gnl|Hg17|chr3 (138149380-138149954)
               


               
               443-599, gnl|bosTau2|chr11 (36966770-36966926)
               

               
               443-599, gnl|canFam2|chr10 (40709035-40708866)
               

               
               443-599, gnl|danRer3|chr9 (10939823-10939656)
               

               
               443-599, gnl|dasNov1|scaffold_9856 (20308-20474)
               

               
               443-599, gnl|echTel1|scaffold_221408 (5265-5416)
               

               
               443-599, gnl|fr1|chrUn (283589376-283589233)
               

               
               443-599, gnl|galGal2|chr1 (128473721-128473899)
               

               
               443-599, gnl|hg17|chr2 (105967930-105968097)
               

               
               443-599, gnl|Hg17|chr2 (105967954-105968110)
               

               
               443-599, gnl|loxAfr1|scaffold_18854 (11526-11677)
               

               
               443-599, gnl|mm7|chr1 (43809508-43809676)
               

               
               443-599, gnl|Mm7|chr1 (43809533-43809689)
               

               
               443-599, gnl|monDom2|scaffold_11 (24981297-24981477)
               

               
               443-599, gnl|oryCun1|scaffold_126239 (6744-6587)
               

               
               443-599, gnl|rheMac2|chr13 (105772127-105772294)
               

               
               443-599, gnl|rn3|chr9 (42777018-42777186)
               

               
               443-599, gnl|tetNig1|chr2 (9051727-9051879)
               

               
               443-599, gnl|xenTro1|scaffold_1892 (16263-16424)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lin (0.145603)
               

               
               thg (0.126791)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               thg (0.126791)

	41-600, gnl\|bosTau2\|chr1 (85318169-85317638)
	41-600, gnl\|Hg17\|chr3 (138149380-138149954)

	443-599, gnl\|bosTau2\|chr11 (36966770-36966926)
	443-599, gnl\|canFam2\|chr10 (40709035-40708866)
	443-599, gnl\|danRer3\|chr9 (10939823-10939656)
	443-599, gnl\|dasNov1\|scaffold_9856 (20308-20474)
	443-599, gnl\|echTel1\|scaffold_221408 (5265-5416)
	443-599, gnl\|fr1\|chrUn (283589376-283589233)
	443-599, gnl\|galGal2\|chr1 (128473721-128473899)
	443-599, gnl\|hg17\|chr2 (105967930-105968097)
	443-599, gnl\|Hg17\|chr2 (105967954-105968110)
	443-599, gnl\|loxAfr1\|scaffold_18854 (11526-11677)
	443-599, gnl\|mm7\|chr1 (43809508-43809676)
	443-599, gnl\|Mm7\|chr1 (43809533-43809689)
	443-599, gnl\|monDom2\|scaffold_11 (24981297-24981477)
	443-599, gnl\|oryCun1\|scaffold_126239 (6744-6587)
	443-599, gnl\|rheMac2\|chr13 (105772127-105772294)
	443-599, gnl\|rn3\|chr9 (42777018-42777186)
	443-599, gnl\|tetNig1\|chr2 (9051727-9051879)
	443-599, gnl\|xenTro1\|scaffold_1892 (16263-16424)