Non-Coding RNA Search

Ss1.1-rthg19_k13.5

Sequence:


               
               GCAGATCTCTGGGCTCAGGCGTCCCCTTGGTTTGTGCGGGGCCAGGCCGCCGGCGGCGAC
AACCCTAGACGAGGGGCGGAGCGCAGGGAACTAGAGAGACGCCGCGGAGCTCAGAGATCG
GCTGAGCGTCATGGAGGGCTCTGACGAGCAACCGGGCCCACAGCCACCGCATCCCGGGGA
TCACTGCATCCGCGACGGCGACTTCGTGGTGCTGAAACGGGAAGATGTGTTTAAAGCAGT
GCAAGTCCAGCGGAGAAAAAAAGTAACTTTTGAAAAACAGTGGTTCTATCTGGATAACGT
TATAGGCCATAATTATGGAACCACATTTGAAGTGACCAACGGAGGAATTCTTCAGCCGAA
GAAGAAGAAGGAAGAGCCTACTTCAGAGACCAAAGAAGCAGGCACTGATAATCGAAATAT
AATCGATGACGGGAAATCTCAGAAACTTACTCAAGATGACATAAAAGCTTTAAAGGACAA
AGGCATTAAAGGAGAGGAAATAGTTCAACAATTAATTGAAAATAGTACAACATTCCGAGA
CAAGACAGAGTTTGCTCAAGATAAATATATAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGATCTCTGGGCTCAGGCGTCCCCTTGGTTTGTGCGGGGCCAGGCCGCCGGCGGCGAC
AACCCTAGACGAGGGGCGGAGCGCAGGGAACTAGAGAGACGCCGCGGAGCTCAGAGATCG
GCTGAGCGTCATGGAGGGCTCTGACGAGCAACCGGGCCCACAGCCACCGCATCCCGGGGA
TCACTGCATCCGCGACGGCGACTTCGTGGTGCTGAAACGGGAAGATGTGTTTAAAGCAGT
GCAAGTCCAGCGGAGAAAAAAAGTAACTTTTGAAAAACAGTGGTTCTATCTGGATAACGT
TATAGGCCATAATTATGGAACCACATTTGAAGTGACCAACGGAGGAATTCTTCAGCCGAA
GAAGAAGAAGGAAGAGCCTACTTCAGAGACCAAAGAAGCAGGCACTGATAATCGAAATAT
AATCGATGACGGGAAATCTCAGAAACTTACTCAAGATGACATAAAAGCTTTAAAGGACAA
AGGCATTAAAGGAGAGGAAATAGTTCAACAATTAATTGAAAATAGTACAACATTCCGAGA
CAAGACAGAGTTTGCTCAAGATAAATATATAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55655004|ref|XP_514815.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55655004|ref|XP_514815.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               19-264, gnl|bosTau2|chr13 (32963368-32963611)
               

               
               19-264, gnl|Hg17|chr20 (5879145-5878918)
               

               
               19-264, gnl|Mm7|chr2 (132556857-132556651)
               


               
               378-518, gnl|bosTau2|chr13 (32968315-32968455)
               

               
               378-518, gnl|Hg17|chr20 (5873569-5873429)
               

               
               378-518, gnl|Mm7|chr2 (132551960-132551823)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-264, gnl|bosTau2|chr13 (32963368-32963611)
               

               
               19-264, gnl|Hg17|chr20 (5879145-5878918)
               

               
               19-264, gnl|Mm7|chr2 (132556857-132556651)
               


               
               378-518, gnl|bosTau2|chr13 (32968315-32968455)
               

               
               378-518, gnl|Hg17|chr20 (5873569-5873429)
               

               
               378-518, gnl|Mm7|chr2 (132551960-132551823)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cje (0.165235)
               

               
               che (0.136314)
               

               
               thg (0.126791)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               che (0.136314)
               

               
               thg (0.126791)

	19-264, gnl\|bosTau2\|chr13 (32963368-32963611)
	19-264, gnl\|Hg17\|chr20 (5879145-5878918)
	19-264, gnl\|Mm7\|chr2 (132556857-132556651)

	378-518, gnl\|bosTau2\|chr13 (32968315-32968455)
	378-518, gnl\|Hg17\|chr20 (5873569-5873429)
	378-518, gnl\|Mm7\|chr2 (132551960-132551823)