Non-Coding RNA Search

Ss1.1-rthg19_l3.5

Sequence:


               
               GCTTTCTTAACCCCTTCAATTAAAAAAAAAAAAAAATGACAGAGCAGAAAAAGAGTAATG
AAAAGTCCATATATTATGAAGTCCTTGAGTGGTGAAAAACCCATTGTGTGTGGTATGTAG
ATGTATTTCCATGCATTTAAACCAGAGAGGAGAGGTGCATGGATATGTGCTGTTCTGTCA
AACAATGAAACATAAATGTTTTTAAGTGTGGAAGTGAAAGTAACTCACACAGTCTGAATG
AGCATGCTACTGCAGCAAAGTATCGACACACCTTCTGGTGGTACATCCATCGTCCTATTA
AACGATATGTCCCAGTCCATTGTGTTAATAAAATGGTCGCAATATATCATAAGTTTGTTG
GTATGACACTATAAGATGAACATATTGCTTTTGTATTATATAACTGTAAGAGATGTAATG
TAAAAGTATAGTATAATAGATGTGGAGAGTGTTCCTACTCAAACTAGTCTCTTCAAGACC
TCGGCCCAAACATGTGACACCGACACATGCAGGAGGGGAAGAGTTCTGCCCTTGCTAAGG
TAGCAAAAGACCTGAGGTGGGTTATTTAGACCGTGAGTGGAGGGCCTCAATTACCTCAGT
AGAAAATCAGGGAAGGAGTTTGACCAGATTATCCTGAGGGCTCTTTTGCAGCTCTAAAAT
TCTGAAATGATATATATACTATTTATATTTTTGTAAACTTTAGATGAAAGTGTTTTATGC
ATCCATTCATCTTTGAGAGGGTGGAGAAATAACAGTGTGAAATTATAGGAAGCTATGTTT
CAAACTTCAGGTGCCCAACTCTTAATCATAGATAAATGTCTTTCAAAGGTGCCATGGTTG
TAGAATTGTCAATCCTTGTCTCAGTGAGTATGTTATCATACATTTAACACAACAGTATTT
ATCACCTAAGAACAGAATTATGTACCGTTATGTTATGAGGACCAGAAAGAAATGTAAGCA
CTTGCCCCTCTGTTAAAATTTCAAATAAATTTATAATTAACTGTATTTTTAAAAAACCTA
GTGATCAGGAAAAATACAAAGGTCTGGATATATTAGCATTCATAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTTCTTAACCCCTTCAATTAAAAAAAAAAAAAAATGACAGAGCAGAAAAAGAGTAATG
AAAAGTCCATATATTATGAAGTCCTTGAGTGGTGAAAAACCCATTGTGTGTGGTATGTAG
ATGTATTTCCATGCATTTAAACCAGAGAGGAGAGGTGCATGGATATGTGCTGTTCTGTCA
AACAATGAAACATAAATGTTTTTAAGTGTGGAAGTGAAAGTAACTCACACAGTCTGAATG
AGCATGCTACTGCAGCAAAGTATCGACACACCTTCTGGTGGTACATCCATCGTCCTATTA
AACGATATGTCCCAGTCCATTGTGTTAATAAAATGGTCGCAATATATCATAAGTTTGTTG
GTATGACACTATAAGATGAACATATTGCTTTTGTATTATATAACTGTAAGAGATGTAATG
TAAAAGTATAGTATAATAGATGTGGAGAGTGTTCCTACTCAAACTAGTCTCTTCAAGACC
TCGGCCCAAACATGTGACACCGACACATGCAGGAGGGGAAGAGTTCTGCCCTTGCTAAGG
TAGCAAAAGACCTGAGGTGGGTTATTTAGACCGTGAGTGGAGGGCCTCAATTACCTCAGT
AGAAAATCAGGGAAGGAGTTTGACCAGATTATCCTGAGGGCTCTTTTGCAGCTCTAAAAT
TCTGAAATGATATATATACTATTTATATTTTTGTAAACTTTAGATGAAAGTGTTTTATGC
ATCCATTCATCTTTGAGAGGGTGGAGAAATAACAGTGTGAAATTATAGGAAGCTATGTTT
CAAACTTCAGGTGCCCAACTCTTAATCATAGATAAATGTCTTTCAAAGGTGCCATGGTTG
TAGAATTGTCAATCCTTGTCTCAGTGAGTATGTTATCATACATTTAACACAACAGTATTT
ATCACCTAAGAACAGAATTATGTACCGTTATGTTATGAGGACCAGAAAGAAATGTAAGCA
CTTGCCCCTCTGTTAAAATTTCAAATAAATTTATAATTAACTGTATTTTTAAAAAACCTA
GTGATCAGGAAAAATACAAAGGTCTGGATATATTAGCATTCATAAAGG

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-1068, gnl|bosTau2|chr8 (55766652-55767715)
               

               
               1-1068, gnl|Hg17|chr9 (111495835-111496838)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1068, gnl|bosTau2|chr8 (55766652-55767715)
               

               
               1-1068, gnl|Hg17|chr9 (111495835-111496838)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               sme (0.305437)
               

               
               sag (0.182715)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               thg (0.126791)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               sag (0.182715)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               thg (0.126791)

	1-1068, gnl\|bosTau2\|chr8 (55766652-55767715)
	1-1068, gnl\|Hg17\|chr9 (111495835-111496838)

	sme (0.305437)
	sag (0.182715)
	mga (0.160205)
	fco (0.157208)
	lun (0.150489)
	isp (0.150376)
	lin (0.145603)
	lnt (0.142308)
	nca (0.136874)
	thg (0.126791)