Non-Coding RNA Search

Ss1.1-rthg19_m3.5

Sequence:


               
               GATCTTGAGGCTGTTCATGATGTCTTGGATCTCTACCTGTGGCTAAGCTACCGGTTCATA
GATATGTTTCCAGATGCCAGCCTTGTTCGAGATCTTCAGAAACAACTAGATGGTATTATC
CAAGATGGTGTACACAACATCACCAAACTGATTAAAATTTCAGAGACGCATAAACTGCTG
AATTTGGAGGGCTTGTCAGCAGAGCGCTCATCCCGTTTGTCAGGAACATTAAAGAGCCAA
GCCAGAAGGAATCGCAGCACCAAAGCTTTAGGGAGTAAAGCTGCGGAGCCCCTCAGCCCT
GCTGCAGGAGAGAAATCCCTTGCTTCCAGATTGGTGCAGCAAGGCCTCCTCACTGCAGAC
ATGCTGAAACAGCTGGAGAAAGAGTGGATGACACAACAAACTGAGCATGGCAAAGAAAGA
ACAGAATCTGGAACTTACTCAAAAGGGACAAGAAGAAAGAAGAAGGATCCTGATTCAGAT
TAGTTTTATTTTTATTTTTGCCAATAAAATCTATTTTAAAATCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCTTGAGGCTGTTCATGATGTCTTGGATCTCTACCTGTGGCTAAGCTACCGGTTCATA
GATATGTTTCCAGATGCCAGCCTTGTTCGAGATCTTCAGAAACAACTAGATGGTATTATC
CAAGATGGTGTACACAACATCACCAAACTGATTAAAATTTCAGAGACGCATAAACTGCTG
AATTTGGAGGGCTTGTCAGCAGAGCGCTCATCCCGTTTGTCAGGAACATTAAAGAGCCAA
GCCAGAAGGAATCGCAGCACCAAAGCTTTAGGGAGTAAAGCTGCGGAGCCCCTCAGCCCT
GCTGCAGGAGAGAAATCCCTTGCTTCCAGATTGGTGCAGCAAGGCCTCCTCACTGCAGAC
ATGCTGAAACAGCTGGAGAAAGAGTGGATGACACAACAAACTGAGCATGGCAAAGAAAGA
ACAGAATCTGGAACTTACTCAAAAGGGACAAGAAGAAAGAAGAAGGATCCTGATTCAGAT
TAGTTTTATTTTTATTTTTGCCAATAAAATCTATTTTAAAATCAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61809683|ref|XP_582366.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61809683|ref|XP_582366.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               245-404, - strand, RNAz p=0.943472

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               245-404, - strand, RNAz p=0.943472

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               46-519, gnl|bosTau2|chr28 (20318586-20318114)
               

               
               46-519, gnl|Hg17|chr10 (70638360-70638854)
               

               
               46-519, gnl|Mm7|chr10 (61948574-61948123)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-519, gnl|bosTau2|chr28 (20318586-20318114)
               

               
               46-519, gnl|Hg17|chr10 (70638360-70638854)
               

               
               46-519, gnl|Mm7|chr10 (61948574-61948123)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cbe (0.478469)
               

               
               cte (0.29274)
               

               
               hea (0.204499)
               

               
               mga (0.160205)
               

               
               thg (0.126791)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               cte (0.29274)
               

               
               hea (0.204499)
               

               
               mga (0.160205)
               

               
               thg (0.126791)

	46-519, gnl\|bosTau2\|chr28 (20318586-20318114)
	46-519, gnl\|Hg17\|chr10 (70638360-70638854)
	46-519, gnl\|Mm7\|chr10 (61948574-61948123)

	cbe (0.478469)
	cte (0.29274)
	hea (0.204499)
	mga (0.160205)
	thg (0.126791)