Non-Coding RNA Search

Ss1.1-rthg20_a14.5

Sequence:


               
               GTCTTTTATTTAAGTTTTTTAAGTTAAGAAAGCTGGTGACATATTTATACGTTTTTGTGC
AAAAATAAATGAATGGCAATAGATTTTAAAAAATCTTATTATGTACTTCTGTGTGAAAAA
GTCTGTATAATATTTCCCTTAAATATGCATTATTTTACTTGTGAGTTTTTTACTGAATTA
ATCTGAAATGTACAAGCCCTGGATTTGCTACAGAGTGAGAACTTATTTTATTTTTTTTTT
ATTTTTAATTTTGGAAATTCTGCAGAAATCAGAACTCTTACCATGGTTTGAACTAAAGAG
GGGAAATGGGGAGGGAAAAGGGGTGGGATTGTCCAGCATGCTTGTATGTATATTTCAGAA
ACTTTTTTAAATGTAAAAGCTGTACATTTCTGGGAAGTTCTGAATTTCTTTTGTTTCCTT
TTTTCCTTCAAGCATTTTGCAGTGAGCTTCTTTTATATATAGCAAACAATTTGAAAGAAT
ACAAAAATATGTGAAGTTCATTAAAAAAAAAAAAAAACTACAGTATAGCGCTGGTACAGT
ACACTAAAAGACTTGATAAAAAGAAAACAATACTAAAAGGCCTCCATTTTAAATGTCATT
CATATATACCTTGTGAATGAGAGCTATATACTTTTACACACTTTTTTAGAGGAATAAATT
ATTGAATTACTGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTTTTATTTAAGTTTTTTAAGTTAAGAAAGCTGGTGACATATTTATACGTTTTTGTGC
AAAAATAAATGAATGGCAATAGATTTTAAAAAATCTTATTATGTACTTCTGTGTGAAAAA
GTCTGTATAATATTTCCCTTAAATATGCATTATTTTACTTGTGAGTTTTTTACTGAATTA
ATCTGAAATGTACAAGCCCTGGATTTGCTACAGAGTGAGAACTTATTTTATTTTTTTTTT
ATTTTTAATTTTGGAAATTCTGCAGAAATCAGAACTCTTACCATGGTTTGAACTAAAGAG
GGGAAATGGGGAGGGAAAAGGGGTGGGATTGTCCAGCATGCTTGTATGTATATTTCAGAA
ACTTTTTTAAATGTAAAAGCTGTACATTTCTGGGAAGTTCTGAATTTCTTTTGTTTCCTT
TTTTCCTTCAAGCATTTTGCAGTGAGCTTCTTTTATATATAGCAAACAATTTGAAAGAAT
ACAAAAATATGTGAAGTTCATTAAAAAAAAAAAAAAACTACAGTATAGCGCTGGTACAGT
ACACTAAAAGACTTGATAAAAAGAAAACAATACTAAAAGGCCTCCATTTTAAATGTCATT
CATATATACCTTGTGAATGAGAGCTATATACTTTTACACACTTTTTTAGAGGAATAAATT
ATTGAATTACTGAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               310-447, - strand, RNAz p=0.922262

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               310-447, - strand, RNAz p=0.922262

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               364-418, + strand, RNAmicro p=0.980289

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               364-418, + strand, RNAmicro p=0.980289

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-684, gnl|bosTau2|chr17 (33583119-33583794)
               

               
               1-684, gnl|Hg17|chr12 (114859771-114859101)
               

               
               1-684, gnl|Mm7|chr5 (117993741-117994429)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr17 (33583119-33583794)
               

               
               1-684, gnl|Hg17|chr12 (114859771-114859101)
               

               
               1-684, gnl|Mm7|chr5 (117993741-117994429)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               nlu (0.191681)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               nlu (0.191681)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

	1-684, gnl\|bosTau2\|chr17 (33583119-33583794)
	1-684, gnl\|Hg17\|chr12 (114859771-114859101)
	1-684, gnl\|Mm7\|chr5 (117993741-117994429)

	amn (0.417711)
	nlu (0.191681)
	nca (0.136874)
	ova (0.129132)
	thg (0.126791)
	pgl (0.118483)
	nbm (0.0993246)