Non-Coding RNA Search

Ss1.1-rthg20_f13.5

Sequence:


               
               GGCTGTGGCATAGGCCGGCAGCTGTAGTTCCAATTCAGCCCCTAACCTGAGAACCTCCAT
ATGCTGCGGGTGCAGCCCTAAAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATA
CACAGGTATTGTGGCAGGAAATATAAGAAGCCCATGAGAGAAGCAAGTTAGTGTTGTAAA
CTTAAGAGTGCAATTTCAAGGGTCATTGTAACAGCAGCATTTGTGTTATCTTTTAAGAAA
CACGCTACATACCTTGCCATGTTTCATGCCTTTGGGTTTTGCTAGTCGATAAAAATTTCA
TTCAGTCACTGAATTGCCATTATTATACCTAAAAGTTCCCAGACATTTGTTGCTATTTCC
TATTTTATCTCCAAGCTGACTTTTGAATGAAAGTTATTAGAATCCCTTTAGCCAGATTGC
TTGGTTTTTCACTGGTAATCAAACCTCAGTGGTACTGAAGTCAAAAAGTACAACTAAGAC
CTAAACCAGAATCATAGTTTGCATATATGGCAACAGTGTTGTGTGCATTCGCCTTCTCAG
TGTTGAGTGACAGGATGAGGAGAAATTACTTGACTGACATTTTTCTATGGTTGAATTAAA
AGACACCTTTGTTTTGCCTTTAGGTTGAGTAGAAGGTGCTAAGATACTGGATGTTGACCC
TATCTTAGTTTGATTTGGAGTAATAAAAGAGAGGGGAAGGACTTATAGGCTTGTTTATTG
ACTTTTTCCCCTGCAGTGTGATAGTGCTGATGTTTCATCAATTTTACACATAGTATGTAA
TTATGAAACCATATATCTCACTTAAGTAACTATAAATCATTGTCTATTATTTAAAGCCAA
CAAAACAGTATAACAGTTTTAAGTTCAACAATGTTAAAGTATTGTATAGAAATATATTGG
AGGCAAAGTTCAGTTGATGACAATTGTGTATATGTTACGGATGCTGTAAATTATTTTTAA
TAAAGAAAATTGTATTATCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGTGGCATAGGCCGGCAGCTGTAGTTCCAATTCAGCCCCTAACCTGAGAACCTCCAT
ATGCTGCGGGTGCAGCCCTAAAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATA
CACAGGTATTGTGGCAGGAAATATAAGAAGCCCATGAGAGAAGCAAGTTAGTGTTGTAAA
CTTAAGAGTGCAATTTCAAGGGTCATTGTAACAGCAGCATTTGTGTTATCTTTTAAGAAA
CACGCTACATACCTTGCCATGTTTCATGCCTTTGGGTTTTGCTAGTCGATAAAAATTTCA
TTCAGTCACTGAATTGCCATTATTATACCTAAAAGTTCCCAGACATTTGTTGCTATTTCC
TATTTTATCTCCAAGCTGACTTTTGAATGAAAGTTATTAGAATCCCTTTAGCCAGATTGC
TTGGTTTTTCACTGGTAATCAAACCTCAGTGGTACTGAAGTCAAAAAGTACAACTAAGAC
CTAAACCAGAATCATAGTTTGCATATATGGCAACAGTGTTGTGTGCATTCGCCTTCTCAG
TGTTGAGTGACAGGATGAGGAGAAATTACTTGACTGACATTTTTCTATGGTTGAATTAAA
AGACACCTTTGTTTTGCCTTTAGGTTGAGTAGAAGGTGCTAAGATACTGGATGTTGACCC
TATCTTAGTTTGATTTGGAGTAATAAAAGAGAGGGGAAGGACTTATAGGCTTGTTTATTG
ACTTTTTCCCCTGCAGTGTGATAGTGCTGATGTTTCATCAATTTTACACATAGTATGTAA
TTATGAAACCATATATCTCACTTAAGTAACTATAAATCATTGTCTATTATTTAAAGCCAA
CAAAACAGTATAACAGTTTTAAGTTCAACAATGTTAAAGTATTGTATAGAAATATATTGG
AGGCAAAGTTCAGTTGATGACAATTGTGTATATGTTACGGATGCTGTAAATTATTTTTAA
TAAAGAAAATTGTATTATCAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               112-980, gnl|bosTau2|chr21 (20380466-20379588)
               

               
               112-980, gnl|Hg17|chr15 (76579936-76580848)
               

               
               112-980, gnl|Mm7|chr9 (54941045-54941831)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               112-980, gnl|bosTau2|chr21 (20380466-20379588)
               

               
               112-980, gnl|Hg17|chr15 (76579936-76580848)
               

               
               112-980, gnl|Mm7|chr9 (54941045-54941831)

Expressed library(ies): 30 entry(ies)

More info

Expressed library(ies): 30 entry(ies)

Help | Less info


               
               sug (0.509165)
               

               
               hea (0.408998)
               

               
               mgm (0.360685)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               pgl (0.236967)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.509165)
               

               
               hea (0.408998)
               

               
               mgm (0.360685)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               pgl (0.236967)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	112-980, gnl\|bosTau2\|chr21 (20380466-20379588)
	112-980, gnl\|Hg17\|chr15 (76579936-76580848)
	112-980, gnl\|Mm7\|chr9 (54941045-54941831)

	sug (0.509165)
	hea (0.408998)
	mgm (0.360685)
	rec (0.346141)
	vin (0.332557)
	kid (0.259471)
	pgl (0.236967)
	fcc (0.197785)
	ldo (0.194005)
	sag (0.182715)
	gul (0.177588)
	fty (0.17584)
	ton (0.1755)
	sin (0.174948)
	cki (0.165235)
	mga (0.160205)
	fco (0.157208)
	isp (0.150376)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	lyg (0.133103)
	ret (0.128733)
	thg (0.126791)
	ese (0.126502)
	tra (0.123092)
	eru (0.120048)
	ebs (0.118301)
	spc (0.113366)