Non-Coding RNA Search

Ss1.1-rthg20_h7.5

Sequence:


               
               GCATTGTCCTAGTTTTGAAATTTCTAGTACATTTCAGAGTCTCTAAGAATTGTGAAAGCT
TTTGTTTTATTTTCAATGAAAGTCACAAACTCTTCTTCTTTGATTCACAAAGGTGAAGGG
TCCCCAGTACACATATTTGGATACTTGGTTGTTTTTAAGACCTTCAGAGAGCTCCTAGCA
TTTTATTTACGGACAGAAAAGGCATGTGGAATCTTAAGGCTTTCCTGGCCTGTATCCTCC
ACGTAATGACTCTAAGCTGGTCTCTAAGCCAATATTCTACAAACCAGCGCCCAGGAAAGA
CAGCTCATAAGTGTATAATTCTTTGGAGCTCAATTCTATGCAGTCGTAGTAATGTTTCAT
TAAGTCACTGTGTATTTTTAAGTGTTGATACATTAAAAGTTGCTTTATGGAAGATGAGTA
AATTTTTTAAACACTTGAAATTTTTACTTCCCTGATAACTTCTGCAGATTAGGGCATGTA
ACCAAAAGCAGCTTAAATCAAATACTCAAAAAAATAAAATAACAGGATGCTCTTTTTAGA
TTCTTCTAGTTTGTGTTCCTATTTCAGGACCTTCATTATTTTTCTCTTATTCAAAAATAT
TTTATGTCCTATACATTTATGGACTGCAGGGTAAATTATTTGGGCATGAATAAGCAAAAG
TATAGTTTTTCTTTCACTTTGACTAATTCAAGTAATAACACTTCTTTTTGGCCAATATTT
TCTTGCTGCACAATTCAAAAAAGTACATTGTCTACTTTTTGAGAAGAAAGTAGTATTACT
CAAAAGTTTACTACTGACAGATTTGTATTGCAGGAACATGGCTAGTTTTGCTTTCAGTGT
TAAGACAAATCATTTAAAAATTTTACAGTCTAAAAGTCATACTGGTATTAGTATCAGGTA
AGGAAATTAAAGTTTTAAAAATAGCTTCATTCTCTTCAATATGCATTCAGATTTTACTTT
AAAATACATCTGGTACTGTAAAGAACCTGAAGTGGTTCGCACTTAATGGGTCATTAATCC
AGTATTCTTTGCCCTGACTGTTTGGATATTAAAGTTCCTTTATGTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATTGTCCTAGTTTTGAAATTTCTAGTACATTTCAGAGTCTCTAAGAATTGTGAAAGCT
TTTGTTTTATTTTCAATGAAAGTCACAAACTCTTCTTCTTTGATTCACAAAGGTGAAGGG
TCCCCAGTACACATATTTGGATACTTGGTTGTTTTTAAGACCTTCAGAGAGCTCCTAGCA
TTTTATTTACGGACAGAAAAGGCATGTGGAATCTTAAGGCTTTCCTGGCCTGTATCCTCC
ACGTAATGACTCTAAGCTGGTCTCTAAGCCAATATTCTACAAACCAGCGCCCAGGAAAGA
CAGCTCATAAGTGTATAATTCTTTGGAGCTCAATTCTATGCAGTCGTAGTAATGTTTCAT
TAAGTCACTGTGTATTTTTAAGTGTTGATACATTAAAAGTTGCTTTATGGAAGATGAGTA
AATTTTTTAAACACTTGAAATTTTTACTTCCCTGATAACTTCTGCAGATTAGGGCATGTA
ACCAAAAGCAGCTTAAATCAAATACTCAAAAAAATAAAATAACAGGATGCTCTTTTTAGA
TTCTTCTAGTTTGTGTTCCTATTTCAGGACCTTCATTATTTTTCTCTTATTCAAAAATAT
TTTATGTCCTATACATTTATGGACTGCAGGGTAAATTATTTGGGCATGAATAAGCAAAAG
TATAGTTTTTCTTTCACTTTGACTAATTCAAGTAATAACACTTCTTTTTGGCCAATATTT
TCTTGCTGCACAATTCAAAAAAGTACATTGTCTACTTTTTGAGAAGAAAGTAGTATTACT
CAAAAGTTTACTACTGACAGATTTGTATTGCAGGAACATGGCTAGTTTTGCTTTCAGTGT
TAAGACAAATCATTTAAAAATTTTACAGTCTAAAAGTCATACTGGTATTAGTATCAGGTA
AGGAAATTAAAGTTTTAAAAATAGCTTCATTCTCTTCAATATGCATTCAGATTTTACTTT
AAAATACATCTGGTACTGTAAAGAACCTGAAGTGGTTCGCACTTAATGGGTCATTAATCC
AGTATTCTTTGCCCTGACTGTTTGGATATTAAAGTTCCTTTATGTTTT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-348, gnl|bosTau2|chr11 (49499686-49499324)
               

               
               1-348, gnl|Hg17|chr2 (70350054-70349619)
               

               
               1-348, gnl|Mm7|chr6 (86506867-86507255)
               


               
               425-1068, gnl|bosTau2|chr11 (49499328-49498674)
               

               
               425-1068, gnl|Hg17|chr2 (70349704-70348993)
               

               
               425-1068, gnl|Mm7|chr6 (86507170-86507877)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-348, gnl|bosTau2|chr11 (49499686-49499324)
               

               
               1-348, gnl|Hg17|chr2 (70350054-70349619)
               

               
               1-348, gnl|Mm7|chr6 (86506867-86507255)
               


               
               425-1068, gnl|bosTau2|chr11 (49499328-49498674)
               

               
               425-1068, gnl|Hg17|chr2 (70349704-70348993)
               

               
               425-1068, gnl|Mm7|chr6 (86507170-86507877)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               elu (0.385356)
               

               
               tra (0.369276)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               tra (0.369276)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)

	1-348, gnl\|bosTau2\|chr11 (49499686-49499324)
	1-348, gnl\|Hg17\|chr2 (70350054-70349619)
	1-348, gnl\|Mm7\|chr6 (86506867-86507255)

	425-1068, gnl\|bosTau2\|chr11 (49499328-49498674)
	425-1068, gnl\|Hg17\|chr2 (70349704-70348993)
	425-1068, gnl\|Mm7\|chr6 (86507170-86507877)

	elu (0.385356)
	tra (0.369276)
	fce (0.271592)
	ece (0.229305)
	eye (0.170503)
	fhi (0.169578)
	liv (0.146284)
	pty (0.142714)
	ste (0.135208)
	pla (0.133672)
	sug (0.127291)
	thg (0.126791)
	ese (0.126502)