Non-Coding RNA Search

Ss1.1-rthg20_j4.5

Sequence:


               
               CGTCGGCCCGCTAGAGACGCACGTGCACTGGGCACAGCTCCGTGAAGACACATGCTCATG
AGTCTGTCTCTGTGCTTTCAGACCATCATCAAAGAGGGGGTGTTGACCAAACAGAACAAT
TCATTCCAGCGGTCAAAAAGGAGATACTTTAAGCTTCGAGGGCGAACACTGTACTACGCA
AAAACTGCCAAGGTGAGATGCCGTGGAGAAACTTCGCAGAGACAACCCTCCAAGGAGCTG
CAGGGAGAGGCTGGGCACCTGGCCCTCATCTTGGGAAACAGCCTTCAATTCTAGATCGGT
TATTTCGAGCGTATTTTGTAATGCTCTAGGCTGCTGGGTCTGGGTTTTATTTCTTATAAA
CATGGATTTTTATTCATTTTCTCTTTCTTTAATGGGGAAAGGAGAAGAGGCCATGGAAAT
AACCACATTACAGTTAGGTGTCTTTCTTTTGGAAAGGTTGGGGGTCAGTGGCTTCAAAAC
CTCTTATTACGGCCTAAATGTCTTTTTTTTTTTAAAAAAAAAAAAGAGAAAACCCTTCAT
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AAAAAAAGAAAAACCCAAACAAAAAAAAAACCAAACAAACCCCTACTT
CATTGAGATATAATTGGCTTAAATAAAACTATCCAGATGCTTAATGTGCACAACCTGATG
AGTTTGGAGAAAAGTGTATACCTATGAAGCTAACTAAGTGTGCTTTTGAAGCATATTGGG
CATCTGGTGTGTCAGCAGAAAGGATTTCTGGCCTTTCTAGCCATGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTCGGCCCGCTAGAGACGCACGTGCACTGGGCACAGCTCCGTGAAGACACATGCTCATG
AGTCTGTCTCTGTGCTTTCAGACCATCATCAAAGAGGGGGTGTTGACCAAACAGAACAAT
TCATTCCAGCGGTCAAAAAGGAGATACTTTAAGCTTCGAGGGCGAACACTGTACTACGCA
AAAACTGCCAAGGTGAGATGCCGTGGAGAAACTTCGCAGAGACAACCCTCCAAGGAGCTG
CAGGGAGAGGCTGGGCACCTGGCCCTCATCTTGGGAAACAGCCTTCAATTCTAGATCGGT
TATTTCGAGCGTATTTTGTAATGCTCTAGGCTGCTGGGTCTGGGTTTTATTTCTTATAAA
CATGGATTTTTATTCATTTTCTCTTTCTTTAATGGGGAAAGGAGAAGAGGCCATGGAAAT
AACCACATTACAGTTAGGTGTCTTTCTTTTGGAAAGGTTGGGGGTCAGTGGCTTCAAAAC
CTCTTATTACGGCCTAAATGTCTTTTTTTTTTTAAAAAAAAAAAAGAGAAAACCCTTCAT
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AAAAAAAGAAAAACCCAAACAAAAAAAAAACCAAACAAACCCCTACTT
CATTGAGATATAATTGGCTTAAATAAAACTATCCAGATGCTTAATGTGCACAACCTGATG
AGTTTGGAGAAAAGTGTATACCTATGAAGCTAACTAAGTGTGCTTTTGAAGCATATTGGG
CATCTGGTGTGTCAGCAGAAAGGATTTCTGGCCTTTCTAGCCATGGTC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               40-394, gnl|bosTau2|chr3 (80569299-80568949)
               

               
               40-394, gnl|Hg17|chr2 (234078861-234079233)
               


               
               606-756, gnl|bosTau2|chr3 (80568445-80568291)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-394, gnl|bosTau2|chr3 (80569299-80568949)
               

               
               40-394, gnl|Hg17|chr2 (234078861-234079233)
               


               
               606-756, gnl|bosTau2|chr3 (80568445-80568291)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	40-394, gnl\|bosTau2\|chr3 (80569299-80568949)
	40-394, gnl\|Hg17\|chr2 (234078861-234079233)

	606-756, gnl\|bosTau2\|chr3 (80568445-80568291)