Non-Coding RNA Search

Ss1.1-rthg20_k24.5

Sequence:


               
               CGGGAGGGATATTGCGGGGGGAGGAAGAAAGTGTTAATTAACTTCTCTTATGATCGATCG
CCAGAGCATTAACTGCCAACTTGAAGCTGGAGGTCTTCCTTTGAGGCTTGAAAATACTGG
GAGAAGCTCTGTGGTGCAGGGCTCTGGTTGCCTTTCAGAGGAAGTCCCACGCTACAGCAT
TGGCACAGTGTCATGGAAAAGTGGGACTGTGGCCAAGGAACTCTGGCTATCCAAGTGTCT
TCAGAAGAGTGTTGTGGTCATCTTAAAGAGACTTCCCTTTCTGGAAATGAGGTGACTTGG
CTACTCTTGAAACTGGATTTGAAGTAACTGTAAACCCTAAATCTTCATTTTCATCCCAGA
TCTGGTTGAGTATAAACCTCAGATATGTAAGGGCTGGCCGGAGCTGTTTATTTCAAAAGA
TACTGTTCAATTTAAAGCTATTTTTCGTCAGAGGTTTTTTGTTTTTTTTTTCTATATATA
AAGCTGAAATTAAGTTTTGTACTCATTAGGATTTACATCTCCTCTCCCCATTCCACCCCC
ACTGAAATCTGTGCAAGAAAATTTAGTACTTGGCTCTGAGGTTGCCAGTTATCAGTAATC
TATTTTGCATATGAAAGTTTGTATTTAACTGTTTTCTTCATTAAAAACCTTACAGTGGTT
ACGCATATTTAATTTCAGAAAATTTAGAGTTGGTCAGAACATATTTTGCAAGATCTAGAG
CCTAGCGTTGCTTTTTCGATGTAATAAAAGGTTGTCTGGCAGAACCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGAGGGATATTGCGGGGGGAGGAAGAAAGTGTTAATTAACTTCTCTTATGATCGATCG
CCAGAGCATTAACTGCCAACTTGAAGCTGGAGGTCTTCCTTTGAGGCTTGAAAATACTGG
GAGAAGCTCTGTGGTGCAGGGCTCTGGTTGCCTTTCAGAGGAAGTCCCACGCTACAGCAT
TGGCACAGTGTCATGGAAAAGTGGGACTGTGGCCAAGGAACTCTGGCTATCCAAGTGTCT
TCAGAAGAGTGTTGTGGTCATCTTAAAGAGACTTCCCTTTCTGGAAATGAGGTGACTTGG
CTACTCTTGAAACTGGATTTGAAGTAACTGTAAACCCTAAATCTTCATTTTCATCCCAGA
TCTGGTTGAGTATAAACCTCAGATATGTAAGGGCTGGCCGGAGCTGTTTATTTCAAAAGA
TACTGTTCAATTTAAAGCTATTTTTCGTCAGAGGTTTTTTGTTTTTTTTTTCTATATATA
AAGCTGAAATTAAGTTTTGTACTCATTAGGATTTACATCTCCTCTCCCCATTCCACCCCC
ACTGAAATCTGTGCAAGAAAATTTAGTACTTGGCTCTGAGGTTGCCAGTTATCAGTAATC
TATTTTGCATATGAAAGTTTGTATTTAACTGTTTTCTTCATTAAAAACCTTACAGTGGTT
ACGCATATTTAATTTCAGAAAATTTAGAGTTGGTCAGAACATATTTTGCAAGATCTAGAG
CCTAGCGTTGCTTTTTCGATGTAATAAAAGGTTGTCTGGCAGAACCTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               539-768, gnl|bosTau2|chr21 (9427817-9427595)
               

               
               539-768, gnl|Hg17|chr3 (186831393-186831586)
               

               
               539-768, gnl|Mm7|chr16 (21698383-21698588)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               539-768, gnl|bosTau2|chr21 (9427817-9427595)
               

               
               539-768, gnl|Hg17|chr3 (186831393-186831586)
               

               
               539-768, gnl|Mm7|chr16 (21698383-21698588)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               fce (0.271592)
               

               
               kid (0.259471)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)

	539-768, gnl\|bosTau2\|chr21 (9427817-9427595)
	539-768, gnl\|Hg17\|chr3 (186831393-186831586)
	539-768, gnl\|Mm7\|chr16 (21698383-21698588)

	fce (0.271592)
	kid (0.259471)
	sag (0.182715)
	mgm (0.180343)
	fty (0.17584)
	isp (0.150376)
	bfe (0.149858)
	ski (0.146735)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)