Non-Coding RNA Search

Ss1.1-rthg20_p7.5

Sequence:


               
               AGCTTCCAGGCAGAGAGGATCTACGTGTAGAGGCTCCCGTAAGTGGGGAGCCCAGCCCTC
GCACAAGTGCTGGGATGCTCTTGTTCTGAATTGAATGAATCTAGGCGGGTGAAAGAGCCG
GGTCTGCAAGGCGGGGTCTCAGAGCGCTTCAGCTCCAAGCGTCAAAAGAAGTCAACCTGG
TGCCAGGTGAGGAGTAGCCAAACTGCCCATTCCCTTCTCCAAAGGGACATCACTGCCTCC
GACCCAGCGCGGCGCATCCCCGGGATTTGGAATATATAGCTGAATCTCACTACACAGCGG
GGTTTCTTAGCCAGAAGTCATCCACGAATTCCTCTGAAATTATATGGAAATTCTTGCATA
TGTGAGACTTCAAAAGATGACCCCAAGCTGCAGCCGGGTCTGCCCAGGATGGAAGGCTCT
GGACTGAGGCCCACCCCAGGCACGGAAAAGGGAGGACTAGCGGCAGCTCTGAGGCGCTGC
ATGAAACTGAAATAGGTATGAATAAATCACGAGAACTTGTCCTAAAGAAATTTTAGGGTG
AAAAATGCTGGTAAGCGAAATAAGCCTTAAACTGCCTTTTTACACCCAGACTCTTCATGT
AAAGTGCTGGTTGCAGGTGAGTACTACGCTGAACTCTATACCGTTAAAGTCAGCAGTGAC
CAGGGCTGTTCGGCAGGGCTCTCCTGGAGAGTCAGGAAGGTTCTGTCGATGATACGGTGT
AGATACACATCAGTGAGCTGGCCTCTCTGGGGTGGACAGATTTCTACTCCCATAATATGC
AAATTATTTTGTTCCAAGAGTTATCCCAGTTGGGAGTTTAAAAAATAATTGGTAATCATT
CATGTTATTTTTATTTTTAATTAAAGCACTGTATTCAGGTAAGAATATTACGTTTCGGGC
TTCTGATGTTCAGATCATAGTGTGTAACTGACCGTAAAAATCACTTATTTTTTATAAATC
TGTTTGCCAATCACCAGGTCATTTCTCCACAACTGTCATTTTGCTCTACAACAGGACAAG
CATCTTTTCTAACAGTGACCTTCTCTATGGGTCAGGGACTGGCTTCAGGTTTCTACTAAG
GGGGCCTCCCTGACACTAGTGAAAATCACACATGAAGGTTTCTGGTGTACTTAGCAAGAA
AATTTCCTAACAAAAAAGATTATTAACCACTGTATAAATTGTGTATATGTACAGAAATAT
GCTTTGAGAAAGTACATGCAATTGACTAGGGGTTATTCTACATACTGAATATTTATAGAT
CTGTAACATTTGTTTCGAAATGTTATTATTTCATTTTATAAAGTACCAGAGTTTCTACTT
TGTTTAGCTTTTCATATATTAAATTAGTAATCTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTTCCAGGCAGAGAGGATCTACGTGTAGAGGCTCCCGTAAGTGGGGAGCCCAGCCCTC
GCACAAGTGCTGGGATGCTCTTGTTCTGAATTGAATGAATCTAGGCGGGTGAAAGAGCCG
GGTCTGCAAGGCGGGGTCTCAGAGCGCTTCAGCTCCAAGCGTCAAAAGAAGTCAACCTGG
TGCCAGGTGAGGAGTAGCCAAACTGCCCATTCCCTTCTCCAAAGGGACATCACTGCCTCC
GACCCAGCGCGGCGCATCCCCGGGATTTGGAATATATAGCTGAATCTCACTACACAGCGG
GGTTTCTTAGCCAGAAGTCATCCACGAATTCCTCTGAAATTATATGGAAATTCTTGCATA
TGTGAGACTTCAAAAGATGACCCCAAGCTGCAGCCGGGTCTGCCCAGGATGGAAGGCTCT
GGACTGAGGCCCACCCCAGGCACGGAAAAGGGAGGACTAGCGGCAGCTCTGAGGCGCTGC
ATGAAACTGAAATAGGTATGAATAAATCACGAGAACTTGTCCTAAAGAAATTTTAGGGTG
AAAAATGCTGGTAAGCGAAATAAGCCTTAAACTGCCTTTTTACACCCAGACTCTTCATGT
AAAGTGCTGGTTGCAGGTGAGTACTACGCTGAACTCTATACCGTTAAAGTCAGCAGTGAC
CAGGGCTGTTCGGCAGGGCTCTCCTGGAGAGTCAGGAAGGTTCTGTCGATGATACGGTGT
AGATACACATCAGTGAGCTGGCCTCTCTGGGGTGGACAGATTTCTACTCCCATAATATGC
AAATTATTTTGTTCCAAGAGTTATCCCAGTTGGGAGTTTAAAAAATAATTGGTAATCATT
CATGTTATTTTTATTTTTAATTAAAGCACTGTATTCAGGTAAGAATATTACGTTTCGGGC
TTCTGATGTTCAGATCATAGTGTGTAACTGACCGTAAAAATCACTTATTTTTTATAAATC
TGTTTGCCAATCACCAGGTCATTTCTCCACAACTGTCATTTTGCTCTACAACAGGACAAG
CATCTTTTCTAACAGTGACCTTCTCTATGGGTCAGGGACTGGCTTCAGGTTTCTACTAAG
GGGGCCTCCCTGACACTAGTGAAAATCACACATGAAGGTTTCTGGTGTACTTAGCAAGAA
AATTTCCTAACAAAAAAGATTATTAACCACTGTATAAATTGTGTATATGTACAGAAATAT
GCTTTGAGAAAGTACATGCAATTGACTAGGGGTTATTCTACATACTGAATATTTATAGAT
CTGTAACATTTGTTTCGAAATGTTATTATTTCATTTTATAAAGTACCAGAGTTTCTACTT
TGTTTAGCTTTTCATATATTAAATTAGTAATCTGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               599-715, + strand, RNAz p=0.995401

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               599-715, + strand, RNAz p=0.995401

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001114, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001114, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               25-399, gnl|bosTau2|chr18 (17901028-17901397)
               

               
               25-399, gnl|Hg17|chr16 (48908000-48908395)
               


               
               450-1354, gnl|bosTau2|chr18 (17901515-17902373)
               

               
               450-1354, gnl|Hg17|chr16 (48908575-48909536)
               


               
               650-1105, gnl|bosTau2|chr14 (48888510-48888051)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-399, gnl|bosTau2|chr18 (17901028-17901397)
               

               
               25-399, gnl|Hg17|chr16 (48908000-48908395)
               


               
               450-1354, gnl|bosTau2|chr18 (17901515-17902373)
               

               
               450-1354, gnl|Hg17|chr16 (48908575-48909536)
               


               
               650-1105, gnl|bosTau2|chr14 (48888510-48888051)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               liv (1.02399)
               

               
               cbl (0.45919)
               

               
               thg (0.380373)
               

               
               cmu (0.372787)
               

               
               sto (0.359648)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               tra (0.246184)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               ecc (0.115035)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (1.02399)
               

               
               cbl (0.45919)
               

               
               thg (0.380373)
               

               
               cmu (0.372787)
               

               
               sto (0.359648)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               tra (0.246184)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               ecc (0.115035)

	25-399, gnl\|bosTau2\|chr18 (17901028-17901397)
	25-399, gnl\|Hg17\|chr16 (48908000-48908395)

	450-1354, gnl\|bosTau2\|chr18 (17901515-17902373)
	450-1354, gnl\|Hg17\|chr16 (48908575-48909536)

	650-1105, gnl\|bosTau2\|chr14 (48888510-48888051)

	liv (1.02399)
	cbl (0.45919)
	thg (0.380373)
	cmu (0.372787)
	sto (0.359648)
	ski (0.29347)
	spl (0.286369)
	tra (0.246184)
	mgm (0.180343)
	eye (0.170503)
	csp (0.161186)
	cag (0.151194)
	lun (0.150489)
	lin (0.145603)
	lyg (0.133103)
	ecc (0.115035)