Ss1.1-rthg21_f14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTACGAGCTGCAGGAGGTTATCGGCAGTGGAGCTACAGCTGTGGTTCAGGCTGCTCTAT GCAAACCCAGGCAAGAACGTGTAGCAATAAAGCGGATCAATTTGGAAAAATGCCAGACCA GCATGGATGAACTATTAAAAGAAATTCAAGCCATGAGTCAGTGCAGCCATCCCAACGTAG TGACTTACTACACCTCTTTTGTGGTAAAAGACGAACTTTGGCTGGTCATGAAATTACTAA GTGGAGGCTCAATGTTGGATATCATAAAATACATCGTCAACCGAGGAGAACACAAGAATG GAGTCCTGGAAGAGGCAATAATAGCGACAATTCTTAAGGAGGTTTTGGAAGGCTTAGACT ATTTACACAGGAATGGTCAGATTCACAGGGATTTGAAAGCTGGTAATATTCTTCTGGGTG AGGATGGTTCCGTACAAATAGCAGATTTTGGGGTAAGTGCTTTCTTAGCAACAGGGGGTG ATGTTACCCGGAACAAAGTGAGAAAAACATTTGTTGGCACCCCATGTTGGATGGCCCCTG AAGTCATGGAACAGGTGAGAGGCTATGACTTCAAGGCGGACATGTGGAGTTTTGGAATAA CTGCCATTGAATTAGCAACAGGAGCAGCGCCTTATCACAAATATCCTCCTATGAAAGTGT TAATGTTGACTTTGCAAAATGACCCACCCACTTTAGAAACAGGAGTAGAGGATAAGGAAA TGATGAAAAAATATGGCAAGTCCTTTAGAAAATTGCTTTCACTGTGTCTTCAGAAAGATC CCTCCAAAAGGCCCACAGCAGCAGAACTTTTAAAATGCAAATTCTTCCAGAAAGCCAAGA ACAGAGAGTACCTGATTGAGAAGCTGCTGACAAGAACACCAGACATAGCCCAAAGAGCCA AAAAGGTAAGAAGAGTTCCAGGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTACGAGCTGCAGGAGGTTATCGGCAGTGGAGCTACAGCTGTGGTTCAGGCTGCTCTAT GCAAACCCAGGCAAGAACGTGTAGCAATAAAGCGGATCAATTTGGAAAAATGCCAGACCA GCATGGATGAACTATTAAAAGAAATTCAAGCCATGAGTCAGTGCAGCCATCCCAACGTAG TGACTTACTACACCTCTTTTGTGGTAAAAGACGAACTTTGGCTGGTCATGAAATTACTAA GTGGAGGCTCAATGTTGGATATCATAAAATACATCGTCAACCGAGGAGAACACAAGAATG GAGTCCTGGAAGAGGCAATAATAGCGACAATTCTTAAGGAGGTTTTGGAAGGCTTAGACT ATTTACACAGGAATGGTCAGATTCACAGGGATTTGAAAGCTGGTAATATTCTTCTGGGTG AGGATGGTTCCGTACAAATAGCAGATTTTGGGGTAAGTGCTTTCTTAGCAACAGGGGGTG ATGTTACCCGGAACAAAGTGAGAAAAACATTTGTTGGCACCCCATGTTGGATGGCCCCTG AAGTCATGGAACAGGTGAGAGGCTATGACTTCAAGGCGGACATGTGGAGTTTTGGAATAA CTGCCATTGAATTAGCAACAGGAGCAGCGCCTTATCACAAATATCCTCCTATGAAAGTGT TAATGTTGACTTTGCAAAATGACCCACCCACTTTAGAAACAGGAGTAGAGGATAAGGAAA TGATGAAAAAATATGGCAAGTCCTTTAGAAAATTGCTTTCACTGTGTCTTCAGAAAGATC CCTCCAAAAGGCCCACAGCAGCAGAACTTTTAAAATGCAAATTCTTCCAGAAAGCCAAGA ACAGAGAGTACCTGATTGAGAAGCTGCTGACAAGAACACCAGACATAGCCCAAAGAGCCA AAAAGGTAAGAAGAGTTCCAGGGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 74 entry(ies) | More info |
| Aligned organism(s): 74 entry(ies) | Help | Less info |
| 24-137, gnl|bosTau2|chr2 (21208149-21208036) | |
| 24-137, gnl|canFam2|chr36 (16110131-16110297) | |
| 24-137, gnl|danRer3|chr2 (15512360-15512187) | |
| 24-137, gnl|dasNov1|scaffold_1052 (48930-49093) | |
| 24-137, gnl|echTel1|scaffold_319419 (11411-11577) | |
| 24-137, gnl|fr1|chrUn (7028908-7029063) | |
| 24-137, gnl|hg17|chr2 (168863990-168864156) | |
| 24-137, gnl|Hg17|chr2 (168864108-168863995) | |
| 24-137, gnl|mm7|chr2 (68340573-68340739) | |
| 24-137, gnl|Mm7|chr2 (68340691-68340578) | |
| 24-137, gnl|monDom2|scaffold_2 (66180289-66180452) | |
| 24-137, gnl|oryCun1|scaffold_195834 (101393-101559) | |
| 24-137, gnl|panTro1|chr13 (58288856-58289022) | |
| 24-137, gnl|rheMac2|chr12 (31809404-31809567) | |
| 24-137, gnl|rn3|chr3 (50354385-50354551) | |
| 24-137, gnl|tetNig1|chr6 (3202493-3202364) | |
| 24-137, gnl|xenTro1|scaffold_204 (1124202-1124359) | |
| 138-247, gnl|bosTau2|chr22 (8675837-8675728) | |
| 138-247, gnl|canFam2|chr23 (10969404-10969493) | |
| 138-247, gnl|danRer3|chr2 (15516398-15516483) | |
| 138-247, gnl|dasNov1|scaffold_1052 (32224-32135) | |
| 138-247, gnl|echTel1|scaffold_222545 (4495-4584) | |
| 138-247, gnl|fr1|chrUn (68260340-68260251) | |
| 138-247, gnl|galGal2|chr2 (4349485-4349574) | |
| 138-247, gnl|hg17|chr3 (38207219-38207308) | |
| 138-247, gnl|Hg17|chr3 (38207226-38207335) | |
| 138-247, gnl|loxAfr1|scaffold_4349 (72767-72678) | |
| 138-247, gnl|mm7|chr9 (118974736-118974647) | |
| 138-247, gnl|Mm7|chr9 (118974727-118974618) | |
| 138-247, gnl|monDom2|scaffold_76 (206131-206044) | |
| 138-247, gnl|oryCun1|scaffold_10543 (2712-2801) | |
| 138-247, gnl|panTro1|chr2 (39309559-39309648) | |
| 138-247, gnl|rheMac2|chr2 (98369315-98369226) | |
| 138-247, gnl|rn3|chr8 (124277902-124277813) | |
| 138-247, gnl|tetNig1|chr6 (3205642-3205730) | |
| 138-247, gnl|xenTro1|scaffold_1338 (122592-122503) | |
| 443-556, gnl|bosTau2|chr22 (8645428-8645315) | |
| 443-556, gnl|canFam2|chr23 (11003723-11003853) | |
| 443-556, gnl|danRer3|chr2 (15521014-15521145) | |
| 443-556, gnl|dasNov1|scaffold_71861 (9343-9457) | |
| 443-556, gnl|echTel1|scaffold_255365 (9930-10060) | |
| 443-556, gnl|fr1|chrUn (68258969-68258848) | |
| 443-556, gnl|galGal2|chr2 (4384917-4385048) | |
| 443-556, gnl|hg17|chr3 (38238054-38238185) | |
| 443-556, gnl|Hg17|chr3 (38238071-38238184) | |
| 443-556, gnl|loxAfr1|scaffold_4349 (41663-41536) | |
| 443-556, gnl|mm7|chr9 (118949009-118948883) | |
| 443-556, gnl|Mm7|chr9 (118948995-118948882) | |
| 443-556, gnl|monDom2|scaffold_76 (171001-170870) | |
| 443-556, gnl|oryCun1|scaffold_115869 (7660-7791) | |
| 443-556, gnl|panTro1|chr2 (39340474-39340605) | |
| 443-556, gnl|rheMac2|chr2 (98336860-98336729) | |
| 443-556, gnl|rn3|chr8 (124255655-124255531) | |
| 443-556, gnl|tetNig1|chr6 (3213407-3213529) | |
| 443-556, gnl|xenTro1|scaffold_1338 (118697-118567) | |
| 657-791, gnl|bosTau2|chr22 (8639409-8639275) | |
| 657-791, gnl|canFam2|chr23 (11008532-11008674) | |
| 657-791, gnl|danRer3|chr2 (15522994-15523135) | |
| 657-791, gnl|dasNov1|scaffold_71861 (9561-9690) | |
| 657-791, gnl|echTel1|scaffold_315258 (5581-5721) | |
| 657-791, gnl|fr1|chrUn (68258532-68258393) | |
| 657-791, gnl|galGal2|chr2 (4391379-4391521) | |
| 657-791, gnl|hg17|chr3 (38241062-38241204) | |
| 657-791, gnl|Hg17|chr3 (38241066-38241200) | |
| 657-791, gnl|loxAfr1|scaffold_81329 (6883-7025) | |
| 657-791, gnl|mm7|chr9 (118945093-118944951) | |
| 657-791, gnl|Mm7|chr9 (118945087-118944953) | |
| 657-791, gnl|monDom2|scaffold_76 (163204-163062) | |
| 657-791, gnl|oryCun1|scaffold_125133 (9139-8997) | |
| 657-791, gnl|panTro1|chr2 (39343480-39343622) | |
| 657-791, gnl|rheMac2|chr2 (98333842-98333700) | |
| 657-791, gnl|rn3|chr8 (124251377-124251238) | |
| 657-791, gnl|tetNig1|chr6 (3213827-3213967) | |
| 657-791, gnl|xenTro1|scaffold_1338 (115776-115636) |
| Aligned organism(s): 74 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 24-137, gnl|bosTau2|chr2 (21208149-21208036) | |
| 24-137, gnl|canFam2|chr36 (16110131-16110297) | |
| 24-137, gnl|danRer3|chr2 (15512360-15512187) | |
| 24-137, gnl|dasNov1|scaffold_1052 (48930-49093) | |
| 24-137, gnl|echTel1|scaffold_319419 (11411-11577) | |
| 24-137, gnl|fr1|chrUn (7028908-7029063) | |
| 24-137, gnl|hg17|chr2 (168863990-168864156) | |
| 24-137, gnl|Hg17|chr2 (168864108-168863995) | |
| 24-137, gnl|mm7|chr2 (68340573-68340739) | |
| 24-137, gnl|Mm7|chr2 (68340691-68340578) | |
| 24-137, gnl|monDom2|scaffold_2 (66180289-66180452) | |
| 24-137, gnl|oryCun1|scaffold_195834 (101393-101559) | |
| 24-137, gnl|panTro1|chr13 (58288856-58289022) | |
| 24-137, gnl|rheMac2|chr12 (31809404-31809567) | |
| 24-137, gnl|rn3|chr3 (50354385-50354551) | |
| 24-137, gnl|tetNig1|chr6 (3202493-3202364) | |
| 24-137, gnl|xenTro1|scaffold_204 (1124202-1124359) | |
| 138-247, gnl|bosTau2|chr22 (8675837-8675728) | |
| 138-247, gnl|canFam2|chr23 (10969404-10969493) | |
| 138-247, gnl|danRer3|chr2 (15516398-15516483) | |
| 138-247, gnl|dasNov1|scaffold_1052 (32224-32135) | |
| 138-247, gnl|echTel1|scaffold_222545 (4495-4584) | |
| 138-247, gnl|fr1|chrUn (68260340-68260251) | |
| 138-247, gnl|galGal2|chr2 (4349485-4349574) | |
| 138-247, gnl|hg17|chr3 (38207219-38207308) | |
| 138-247, gnl|Hg17|chr3 (38207226-38207335) | |
| 138-247, gnl|loxAfr1|scaffold_4349 (72767-72678) | |
| 138-247, gnl|mm7|chr9 (118974736-118974647) | |
| 138-247, gnl|Mm7|chr9 (118974727-118974618) | |
| 138-247, gnl|monDom2|scaffold_76 (206131-206044) | |
| 138-247, gnl|oryCun1|scaffold_10543 (2712-2801) | |
| 138-247, gnl|panTro1|chr2 (39309559-39309648) | |
| 138-247, gnl|rheMac2|chr2 (98369315-98369226) | |
| 138-247, gnl|rn3|chr8 (124277902-124277813) | |
| 138-247, gnl|tetNig1|chr6 (3205642-3205730) | |
| 138-247, gnl|xenTro1|scaffold_1338 (122592-122503) | |
| 443-556, gnl|bosTau2|chr22 (8645428-8645315) | |
| 443-556, gnl|canFam2|chr23 (11003723-11003853) | |
| 443-556, gnl|danRer3|chr2 (15521014-15521145) | |
| 443-556, gnl|dasNov1|scaffold_71861 (9343-9457) | |
| 443-556, gnl|echTel1|scaffold_255365 (9930-10060) | |
| 443-556, gnl|fr1|chrUn (68258969-68258848) | |
| 443-556, gnl|galGal2|chr2 (4384917-4385048) | |
| 443-556, gnl|hg17|chr3 (38238054-38238185) | |
| 443-556, gnl|Hg17|chr3 (38238071-38238184) | |
| 443-556, gnl|loxAfr1|scaffold_4349 (41663-41536) | |
| 443-556, gnl|mm7|chr9 (118949009-118948883) | |
| 443-556, gnl|Mm7|chr9 (118948995-118948882) | |
| 443-556, gnl|monDom2|scaffold_76 (171001-170870) | |
| 443-556, gnl|oryCun1|scaffold_115869 (7660-7791) | |
| 443-556, gnl|panTro1|chr2 (39340474-39340605) | |
| 443-556, gnl|rheMac2|chr2 (98336860-98336729) | |
| 443-556, gnl|rn3|chr8 (124255655-124255531) | |
| 443-556, gnl|tetNig1|chr6 (3213407-3213529) | |
| 443-556, gnl|xenTro1|scaffold_1338 (118697-118567) | |
| 657-791, gnl|bosTau2|chr22 (8639409-8639275) | |
| 657-791, gnl|canFam2|chr23 (11008532-11008674) | |
| 657-791, gnl|danRer3|chr2 (15522994-15523135) | |
| 657-791, gnl|dasNov1|scaffold_71861 (9561-9690) | |
| 657-791, gnl|echTel1|scaffold_315258 (5581-5721) | |
| 657-791, gnl|fr1|chrUn (68258532-68258393) | |
| 657-791, gnl|galGal2|chr2 (4391379-4391521) | |
| 657-791, gnl|hg17|chr3 (38241062-38241204) | |
| 657-791, gnl|Hg17|chr3 (38241066-38241200) | |
| 657-791, gnl|loxAfr1|scaffold_81329 (6883-7025) | |
| 657-791, gnl|mm7|chr9 (118945093-118944951) | |
| 657-791, gnl|Mm7|chr9 (118945087-118944953) | |
| 657-791, gnl|monDom2|scaffold_76 (163204-163062) | |
| 657-791, gnl|oryCun1|scaffold_125133 (9139-8997) | |
| 657-791, gnl|panTro1|chr2 (39343480-39343622) | |
| 657-791, gnl|rheMac2|chr2 (98333842-98333700) | |
| 657-791, gnl|rn3|chr8 (124251377-124251238) | |
| 657-791, gnl|tetNig1|chr6 (3213827-3213967) | |
| 657-791, gnl|xenTro1|scaffold_1338 (115776-115636) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| pla (0.267344) | |
| col (0.195008) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| ebs (0.118301) | |
| jca (0.11396) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| col (0.195008) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| ebs (0.118301) | |
| jca (0.11396) |