Ss1.1-rthg21_h24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAATAAAAGTGCCTCTCTGTATATGTTTCTAGGAAAGATTTTTTAAAATGCTTCCTACAT ATCTAAGGGTTAGGTTTTGATTGAGTAGTAAAAATAATAGAAAAAATAAAAGTGGTTCTT TAAGGGTTAGGTTTTGATTGAGTAGTAAAAATAGAAAAAAGAAAGTAATTCTTTATAAAA TATTGTTAAGATGTTCTGTCTTGTTCTGTAATGCCTTTTAAAAAACACGATGATTTGTAA TATTTGATCCCAACAGGAGGATAATTTACAGACCTCACATCAAAAGACTGTTCTTTATAC AACTGTGCTAAAAAATGGGACTTTTTTCACGTTCTTTTAAATATGAAGTTTCCCTGTTGC TTACCATCTATTAAAGTTATGTATTTGCTAAGTGTTCATTTTATACTTTTAAGAATATGT TTAGTAATTCTGTATATGGTTTTTTTCTGGAAGTGGATAACTTTCCTTATAGATTTTCTT TAAAACAACGGTTACATGCTTAAAGTATTTTCCTATTTTAAAAAGTTACATAGAAAGTTT AGACGTTCAAAGCACAACATTAAAATGGAGTCATGGGGAAAAAAGTTACATGGGTTTTGT TTGCTGTCTGAATTTTGGTTGCATTCTTTGATGTTCACACATTTTGTGTAACTGTCTTTT AGCTGTATTGAATTATGTAGTTTTGAATATTAGATGTGATGTAATAGTCAATTTAAACCT ATTTCAGTCTTTGTTTTGCCCCCCGAATACTGTCAGGTGCTGTTGTTTAGTGTAATTTCT TGGCCTGTTCAGTTAGAGAGTGGTGCTCAGTTGTAGAATATATTGTGTATGTATTGATTT TTTAATACTTGGTATGTACATCCCTTGTAATAGAAAAAGCAAAAAATAAAATAACTGTTC TAAGAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAATAAAAGTGCCTCTCTGTATATGTTTCTAGGAAAGATTTTTTAAAATGCTTCCTACAT ATCTAAGGGTTAGGTTTTGATTGAGTAGTAAAAATAATAGAAAAAATAAAAGTGGTTCTT TAAGGGTTAGGTTTTGATTGAGTAGTAAAAATAGAAAAAAGAAAGTAATTCTTTATAAAA TATTGTTAAGATGTTCTGTCTTGTTCTGTAATGCCTTTTAAAAAACACGATGATTTGTAA TATTTGATCCCAACAGGAGGATAATTTACAGACCTCACATCAAAAGACTGTTCTTTATAC AACTGTGCTAAAAAATGGGACTTTTTTCACGTTCTTTTAAATATGAAGTTTCCCTGTTGC TTACCATCTATTAAAGTTATGTATTTGCTAAGTGTTCATTTTATACTTTTAAGAATATGT TTAGTAATTCTGTATATGGTTTTTTTCTGGAAGTGGATAACTTTCCTTATAGATTTTCTT TAAAACAACGGTTACATGCTTAAAGTATTTTCCTATTTTAAAAAGTTACATAGAAAGTTT AGACGTTCAAAGCACAACATTAAAATGGAGTCATGGGGAAAAAAGTTACATGGGTTTTGT TTGCTGTCTGAATTTTGGTTGCATTCTTTGATGTTCACACATTTTGTGTAACTGTCTTTT AGCTGTATTGAATTATGTAGTTTTGAATATTAGATGTGATGTAATAGTCAATTTAAACCT ATTTCAGTCTTTGTTTTGCCCCCCGAATACTGTCAGGTGCTGTTGTTTAGTGTAATTTCT TGGCCTGTTCAGTTAGAGAGTGGTGCTCAGTTGTAGAATATATTGTGTATGTATTGATTT TTTAATACTTGGTATGTACATCCCTTGTAATAGAAAAAGCAAAAAATAAAATAACTGTTC TAAGAAAAAAAAAAAAAAAAAAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 774-891, - strand, RNAz p=0.5834 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 774-891, - strand, RNAz p=0.5834 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 791-894, + strand, RNAmicro p=0.991482 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 122-491, gnl|bosTau2|chr21 (44945495-44945873) | |
| 122-491, gnl|canFam2|chr8 (71606151-71606529) | |
| 122-491, gnl|danRer3|chr17 (33607870-33608186) | |
| 122-491, gnl|dasNov1|scaffold_17233 (13401-13782) | |
| 122-491, gnl|echTel1|scaffold_283332 (68661-69037) | |
| 122-491, gnl|fr1|chrUn (119577735-119577384) | |
| 122-491, gnl|galGal2|chr5 (45332727-45333098) | |
| 122-491, gnl|hg17|chr14 (99813692-99814067) | |
| 122-491, gnl|Hg17|chr14 (99813815-99814188) | |
| 122-491, gnl|loxAfr1|scaffold_9666 (25768-26159) | |
| 122-491, gnl|mm7|chr12 (106336836-106337205) | |
| 122-491, gnl|Mm7|chr12 (106336956-106337322) | |
| 122-491, gnl|monDom2|scaffold_6 (81803281-81803693) | |
| 122-491, gnl|oryCun1|scaffold_193898 (18576-18944) | |
| 122-491, gnl|panTro1|chr15 (100318351-100318727) | |
| 122-491, gnl|rheMac2|chr7 (163554692-163555069) | |
| 122-491, gnl|rn3|chr6 (133162875-133163246) | |
| 122-491, gnl|xenTro1|scaffold_341 (563436-563061) | |
| 579-891, gnl|bosTau2|chr21 (44945915-44946227) | |
| 579-891, gnl|canFam2|chr8 (71606753-71607004) | |
| 579-891, gnl|dasNov1|scaffold_17233 (14005-14258) | |
| 579-891, gnl|echTel1|scaffold_283332 (69269-69510) | |
| 579-891, gnl|galGal2|chr5 (45333317-45333581) | |
| 579-891, gnl|Hg17|chr14 (99814230-99814543) | |
| 579-891, gnl|hg17|chr4 (92112891-92113103) | |
| 579-891, gnl|loxAfr1|scaffold_10324 (53810-54059) | |
| 579-891, gnl|Mm7|chr12 (106337364-106337676) | |
| 579-891, gnl|mm7|chr15 (46722674-46722437) | |
| 579-891, gnl|monDom2|scaffold_6 (81803918-81804181) | |
| 579-891, gnl|oryCun1|scaffold_211518 (88357-88603) | |
| 579-891, gnl|panTro1|chr3 (108142666-108142878) | |
| 579-891, gnl|rheMac2|chr5 (83767476-83767719) | |
| 579-891, gnl|rn3|chr6 (133163466-133163713) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 122-491, gnl|bosTau2|chr21 (44945495-44945873) | |
| 122-491, gnl|canFam2|chr8 (71606151-71606529) | |
| 122-491, gnl|danRer3|chr17 (33607870-33608186) | |
| 122-491, gnl|dasNov1|scaffold_17233 (13401-13782) | |
| 122-491, gnl|echTel1|scaffold_283332 (68661-69037) | |
| 122-491, gnl|fr1|chrUn (119577735-119577384) | |
| 122-491, gnl|galGal2|chr5 (45332727-45333098) | |
| 122-491, gnl|hg17|chr14 (99813692-99814067) | |
| 122-491, gnl|Hg17|chr14 (99813815-99814188) | |
| 122-491, gnl|loxAfr1|scaffold_9666 (25768-26159) | |
| 122-491, gnl|mm7|chr12 (106336836-106337205) | |
| 122-491, gnl|Mm7|chr12 (106336956-106337322) | |
| 122-491, gnl|monDom2|scaffold_6 (81803281-81803693) | |
| 122-491, gnl|oryCun1|scaffold_193898 (18576-18944) | |
| 122-491, gnl|panTro1|chr15 (100318351-100318727) | |
| 122-491, gnl|rheMac2|chr7 (163554692-163555069) | |
| 122-491, gnl|rn3|chr6 (133162875-133163246) | |
| 122-491, gnl|xenTro1|scaffold_341 (563436-563061) | |
| 579-891, gnl|bosTau2|chr21 (44945915-44946227) | |
| 579-891, gnl|canFam2|chr8 (71606753-71607004) | |
| 579-891, gnl|dasNov1|scaffold_17233 (14005-14258) | |
| 579-891, gnl|echTel1|scaffold_283332 (69269-69510) | |
| 579-891, gnl|galGal2|chr5 (45333317-45333581) | |
| 579-891, gnl|Hg17|chr14 (99814230-99814543) | |
| 579-891, gnl|hg17|chr4 (92112891-92113103) | |
| 579-891, gnl|loxAfr1|scaffold_10324 (53810-54059) | |
| 579-891, gnl|Mm7|chr12 (106337364-106337676) | |
| 579-891, gnl|mm7|chr15 (46722674-46722437) | |
| 579-891, gnl|monDom2|scaffold_6 (81803918-81804181) | |
| 579-891, gnl|oryCun1|scaffold_211518 (88357-88603) | |
| 579-891, gnl|panTro1|chr3 (108142666-108142878) | |
| 579-891, gnl|rheMac2|chr5 (83767476-83767719) | |
| 579-891, gnl|rn3|chr6 (133163466-133163713) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bfe (0.149858) | |
| thg (0.126791) |