Non-Coding RNA Search

Ss1.1-rthg22_p16.5

Sequence:


               
               ACGGAGCCGCTGTGCAGGCAGCGATCCTGATCGGGGACAAGTCCGAGAACGTGCAGGACC
TGCTGCTACTCGACGTGACCCCGCTCTCGCTGGGCATCGAGACGGCTGGCGGCGTCATGA
CTCCACTCATCAAAAGGAACACCACGATCCCCACGAAGCAGACGCAGACCTTCACCACCT
ACTCAGACAACCAGAGCAGCGTGCTGGTGCAGGTGTACGAGGGCGAACGGGCCATGACAA
AGGACAATAACCTGCTGGGCAAGTTCGACCTGACCGGGATTCCCCCGGCGCCCCGCGGGG
TCCCCCAGATTGAGGTCACCTTCGACATCGATGCCAATGGCATCCTCAACGTCACCGCCG
CCGACAAGAGCACCGGTAAAGAAAACAAAATCACCATCACCAACGACAAAGGTCGTCTAA
GCAAGGACGACATTGACCGGATGGTGCAGGAGGCTGAGCGGTACAAGTCGGAAGATGAGG
CCAATCGCGACCGGGTAGCCGCCAAAAACGCCGTGGAGTCCTATACCTACAACATCAAGC
AGACGGTGGAAGACGAGAAACTGAGGGGCAAGATTAGCGAGCAGGACAAAAACAAGATCC
TCGACAAGTGTCAGGAGGTGATCAACTGGCTCGACCGAAACCAGATGGCGGAGAAAGATG
AGTATGAACACAAGCAGAAAGAGCTCGAAAGAGTGTGCAACCCCATCATCAGCAAACTTT
ACCAAGGCGGCCCTGGCGGTGGCGGCGGTACTGGAGCCTCCGGGGGACCGACCATCGAGG
AAGTGGACTAAACTTGCAGTCAGTTAGCGTAAACCTCTTTTCCTTTCTATTTTCTTCTTC
CTTTTGTTTTTGTTTCTTCTTTGAAATGTCCTTGTGCCAAGTATGGGGTCTGTTTTGGAA
GTCTTTAGCCCGGTGCATGCATATGAAAGGAAAGGTGCAACAACTTAGTTTAATTATAAA
AGGTTAGTTCTCAAGTTTGATTTTTAAAAACATTATTTGAGGTTTCTCTTTAATGAATTT
TGTGTGTTTGCTGACTTGAAGGTTTTTGGTTAGCTTAGTTTGGGAATGGAGATTTGTTTG
AGATGGGAAACCTGAAGTTTGCACACATGTTCTGTGGAAGCTTGGTAACAATAAAATATA
TAAAAGCTTGAATTGTTATTTTTATGTACTACTTTGAGGGAAGTGAACATGGTAGTAATG
TTAAAGACAGGCATACTTTTGCAAACAAATGCATAAATACAAATTTTAAAGTAAAGGTGA
AATTGATCTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGAGCCGCTGTGCAGGCAGCGATCCTGATCGGGGACAAGTCCGAGAACGTGCAGGACC
TGCTGCTACTCGACGTGACCCCGCTCTCGCTGGGCATCGAGACGGCTGGCGGCGTCATGA
CTCCACTCATCAAAAGGAACACCACGATCCCCACGAAGCAGACGCAGACCTTCACCACCT
ACTCAGACAACCAGAGCAGCGTGCTGGTGCAGGTGTACGAGGGCGAACGGGCCATGACAA
AGGACAATAACCTGCTGGGCAAGTTCGACCTGACCGGGATTCCCCCGGCGCCCCGCGGGG
TCCCCCAGATTGAGGTCACCTTCGACATCGATGCCAATGGCATCCTCAACGTCACCGCCG
CCGACAAGAGCACCGGTAAAGAAAACAAAATCACCATCACCAACGACAAAGGTCGTCTAA
GCAAGGACGACATTGACCGGATGGTGCAGGAGGCTGAGCGGTACAAGTCGGAAGATGAGG
CCAATCGCGACCGGGTAGCCGCCAAAAACGCCGTGGAGTCCTATACCTACAACATCAAGC
AGACGGTGGAAGACGAGAAACTGAGGGGCAAGATTAGCGAGCAGGACAAAAACAAGATCC
TCGACAAGTGTCAGGAGGTGATCAACTGGCTCGACCGAAACCAGATGGCGGAGAAAGATG
AGTATGAACACAAGCAGAAAGAGCTCGAAAGAGTGTGCAACCCCATCATCAGCAAACTTT
ACCAAGGCGGCCCTGGCGGTGGCGGCGGTACTGGAGCCTCCGGGGGACCGACCATCGAGG
AAGTGGACTAAACTTGCAGTCAGTTAGCGTAAACCTCTTTTCCTTTCTATTTTCTTCTTC
CTTTTGTTTTTGTTTCTTCTTTGAAATGTCCTTGTGCCAAGTATGGGGTCTGTTTTGGAA
GTCTTTAGCCCGGTGCATGCATATGAAAGGAAAGGTGCAACAACTTAGTTTAATTATAAA
AGGTTAGTTCTCAAGTTTGATTTTTAAAAACATTATTTGAGGTTTCTCTTTAATGAATTT
TGTGTGTTTGCTGACTTGAAGGTTTTTGGTTAGCTTAGTTTGGGAATGGAGATTTGTTTG
AGATGGGAAACCTGAAGTTTGCACACATGTTCTGTGGAAGCTTGGTAACAATAAAATATA
TAAAAGCTTGAATTGTTATTTTTATGTACTACTTTGAGGGAAGTGAACATGGTAGTAATG
TTAAAGACAGGCATACTTTTGCAAACAAATGCATAAATACAAATTTTAAAGTAAAGGTGA
AATTGATCTCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               240-359, - strand, RNAz p=0.963741

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-359, - strand, RNAz p=0.963741

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               316-411, - strand, RNAmicro p=0.905052

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               316-411, - strand, RNAmicro p=0.905052

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1272, gnl|bosTau2|chr10 (51571674-51570401)
               

               
               1-1272, gnl|Hg17|chr14 (64078441-64079707)
               

               
               1-1272, gnl|Mm7|chr12 (74363840-74365122)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1272, gnl|bosTau2|chr10 (51571674-51570401)
               

               
               1-1272, gnl|Hg17|chr14 (64078441-64079707)
               

               
               1-1272, gnl|Mm7|chr12 (74363840-74365122)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               spc (1.02029)
               

               
               tes (0.623441)
               

               
               cte (0.58548)
               

               
               isp (0.300752)
               

               
               pla (0.267344)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (1.02029)
               

               
               tes (0.623441)
               

               
               cte (0.58548)
               

               
               isp (0.300752)
               

               
               pla (0.267344)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

	1-1272, gnl\|bosTau2\|chr10 (51571674-51570401)
	1-1272, gnl\|Hg17\|chr14 (64078441-64079707)
	1-1272, gnl\|Mm7\|chr12 (74363840-74365122)

	spc (1.02029)
	tes (0.623441)
	cte (0.58548)
	isp (0.300752)
	pla (0.267344)
	thg (0.253582)
	bla (0.248694)
	aor (0.195274)
	fbs (0.175346)
	nco (0.161734)
	fco (0.157208)
	bfe (0.149858)
	fat (0.147427)
	che (0.136314)
	lyg (0.133103)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	tra (0.123092)
	pgl (0.118483)
	med (0.116252)