Non-Coding RNA Search

Ss1.1-rthg23_l8.5

Sequence:


               
               GAACTAGAGACTCTCATACTGAGTGAAGTAAGTCAGAAAGAGAAAGACAAATACCATATG
ATATCACTTATATCTGGAATCTAATATATGGCACAAATGAACCTTTCCACAGAAAAGAAA
ATCATGGACTTGGAGAATAGACTTGTGGTTGCCAAGGGGGAGGAGGAGGGGAGTGGGATG
ATTGGGAGCTTGGGGTTAATAGATGCAGACTATTGCCTTTGGAATGGATTAGCAATGAGA
TCCTGCTGTGTAGCACTGGGAACTATGTCTAGTCACTTATGATGGAGCATGATAATGTGA
GAAAATAGAATGTGTACATGTATGTGTAACTGGGTCACCATGCTGTACAGTAGAAAAAAA
ATTGTATTGGGGAATAACTATTAAATGGAAAAAATA------------AAAAAAAAAAAA
AAAAAAAAAAAATGGTGAAGAAGATGCTGTTTACATCAAGGTGGCCAAGAGTGAGAAAAA
GTAGCCTCGAGGGCCTCTCACCCCCCATCCCTTCCATTCTGGATGGGCCCACCAAGCCAC
TGGGAGCCAAGGCTAGGAAGGGCCCTGTGCTCAGGGCTTTCACCATTGCTTCCTCCCTGG
GGTCGACTCCCTGGGCCTCCTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACTAGAGACTCTCATACTGAGTGAAGTAAGTCAGAAAGAGAAAGACAAATACCATATG
ATATCACTTATATCTGGAATCTAATATATGGCACAAATGAACCTTTCCACAGAAAAGAAA
ATCATGGACTTGGAGAATAGACTTGTGGTTGCCAAGGGGGAGGAGGAGGGGAGTGGGATG
ATTGGGAGCTTGGGGTTAATAGATGCAGACTATTGCCTTTGGAATGGATTAGCAATGAGA
TCCTGCTGTGTAGCACTGGGAACTATGTCTAGTCACTTATGATGGAGCATGATAATGTGA
GAAAATAGAATGTGTACATGTATGTGTAACTGGGTCACCATGCTGTACAGTAGAAAAAAA
ATTGTATTGGGGAATAACTATTAAATGGAAAAAATA------------AAAAAAAAAAAA
AAAAAAAAAAAATGGTGAAGAAGATGCTGTTTACATCAAGGTGGCCAAGAGTGAGAAAAA
GTAGCCTCGAGGGCCTCTCACCCCCCATCCCTTCCATTCTGGATGGGCCCACCAAGCCAC
TGGGAGCCAAGGCTAGGAAGGGCCCTGTGCTCAGGGCTTTCACCATTGCTTCCTCCCTGG
GGTCGACTCCCTGGGCCTCCTTTG

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               1-264, gnl|bosTau2|chr1 (92369539-92369810)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-264, gnl|bosTau2|chr1 (92369539-92369810)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

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               sto (0.539471)
               

               
               che (0.408942)
               

               
               cty (0.31224)
               

               
               cte (0.29274)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               ctl (0.153069)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.539471)
               

               
               che (0.408942)
               

               
               cty (0.31224)
               

               
               cte (0.29274)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               ctl (0.153069)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	sto (0.539471)
	che (0.408942)
	cty (0.31224)
	cte (0.29274)
	ece (0.229305)
	mas (0.210305)
	tes (0.207814)
	fcc (0.197785)
	col (0.195008)
	ill (0.175593)
	fbs (0.175346)
	fco (0.157208)
	ctl (0.153069)
	liv (0.146284)
	csk (0.140746)
	cst (0.140036)
	kid (0.129735)
	ret (0.128733)
	thg (0.126791)
	bla (0.124347)
	med (0.116252)
	jej (0.0989218)
	ldo (0.0970026)