Non-Coding RNA Search

Ss1.1-rthg23_p8.5

Sequence:


               
               CTCAGAAAGCTAGAAGAAGCAAGAGAACCCTCCCCAAACCTCTGACAGAGACTACTACCT
GAAGATAAACAGCAATAAAACATTACAGCTTCTACCTTGTACCTTCCAAAACCCGTTTGG
GAAGTATAGTACAGAAGCAATTTCAAGTACTTTTTTTAAAAAATCGGATAGAATCAGGTA
AAACAGCTATGCGATTAAACTGTTTCAACTCTTGAGGGATCCATTTGGTTTTCTAACTTG
AATTATACATCTGGTTAAAATTTGAATTACTTTATAAAAGAAACATTTCTTTTATGAATT
TTATATATTTGCTCCAGGTGGTTCTCTGTAATGATATAAAAATTGCTCATATTTAGCTTA
AATTTATTAGAGCTAAATTTAATGTTCCTAGTTCACATTTTAAACTTCTGTCATGCTTAC
TTCAAACTCCCTGAATGAGTGATGGGTAAATGATCAAATCAGACATTGCCTTAGTGATAT
TAAGATAACTTTGGTGGTGGTTTCTTTAGAAACATGAAGTTCTTTTTACAGATAATATTT
TGGTATGATTTTCCTTATTTTTTTAAGTAAAGGATAGGTTTGAATTCATATTTGAAATGC
ATAACATGACTATGAAAAATAATCTTTTTTATTTTATATAATACAGATTGAGTAATACCT
CTTCGAGCCTCATCTTAAGAAGGGCTTGAAGAAATGAGTGTCATACCCAAAAAGAGAAAC
CCTTTCTCAGAACTTTAAAGCCTTAGAAAAACTTCCTCAAGCCAACTCCATGAGGTCTAC
TTGGTTTACCTAGGTCATGTTTTAAAAAGATTTCTGACCTTAAAGGAAAATTCCTGAGGC
CTTAACAGTACAAACTTCCTATTCACTGATAGTATGAGATAAACAAAATTCTCATCTTAA
TATGAGTTATGCTTCAGAACAAAAGGCATGTAGGGTAAAGTGTGTGTACCCTATAGTCTA
ACCCAGTAACCTGTCCTGTTGGCAGGAGATTAAGAATTTCTGGTTTGTTTTATCTACAGT
TATTCAAGTAAAAATCACTCTTTTAAATGTATAGCTCATCAGAACAAAAATTATGGGCTG
CATGTTCATAAAATACATAAATAAGATCATGGGGTTTTTTTCTTGGTTTTTGTCCAAGAT
CCTTATACCTTAATATTAACGGACTTGTTCAAGTGACAGGGACTGAATATATGATTGTAA
GTGATGAAGAGAATGATGCAGTGTCTTACTTAGTTATTGAATAATACAGAGCATTTGATG
CATGTTGTACGTGCTGCCAAATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGAAAGCTAGAAGAAGCAAGAGAACCCTCCCCAAACCTCTGACAGAGACTACTACCT
GAAGATAAACAGCAATAAAACATTACAGCTTCTACCTTGTACCTTCCAAAACCCGTTTGG
GAAGTATAGTACAGAAGCAATTTCAAGTACTTTTTTTAAAAAATCGGATAGAATCAGGTA
AAACAGCTATGCGATTAAACTGTTTCAACTCTTGAGGGATCCATTTGGTTTTCTAACTTG
AATTATACATCTGGTTAAAATTTGAATTACTTTATAAAAGAAACATTTCTTTTATGAATT
TTATATATTTGCTCCAGGTGGTTCTCTGTAATGATATAAAAATTGCTCATATTTAGCTTA
AATTTATTAGAGCTAAATTTAATGTTCCTAGTTCACATTTTAAACTTCTGTCATGCTTAC
TTCAAACTCCCTGAATGAGTGATGGGTAAATGATCAAATCAGACATTGCCTTAGTGATAT
TAAGATAACTTTGGTGGTGGTTTCTTTAGAAACATGAAGTTCTTTTTACAGATAATATTT
TGGTATGATTTTCCTTATTTTTTTAAGTAAAGGATAGGTTTGAATTCATATTTGAAATGC
ATAACATGACTATGAAAAATAATCTTTTTTATTTTATATAATACAGATTGAGTAATACCT
CTTCGAGCCTCATCTTAAGAAGGGCTTGAAGAAATGAGTGTCATACCCAAAAAGAGAAAC
CCTTTCTCAGAACTTTAAAGCCTTAGAAAAACTTCCTCAAGCCAACTCCATGAGGTCTAC
TTGGTTTACCTAGGTCATGTTTTAAAAAGATTTCTGACCTTAAAGGAAAATTCCTGAGGC
CTTAACAGTACAAACTTCCTATTCACTGATAGTATGAGATAAACAAAATTCTCATCTTAA
TATGAGTTATGCTTCAGAACAAAAGGCATGTAGGGTAAAGTGTGTGTACCCTATAGTCTA
ACCCAGTAACCTGTCCTGTTGGCAGGAGATTAAGAATTTCTGGTTTGTTTTATCTACAGT
TATTCAAGTAAAAATCACTCTTTTAAATGTATAGCTCATCAGAACAAAAATTATGGGCTG
CATGTTCATAAAATACATAAATAAGATCATGGGGTTTTTTTCTTGGTTTTTGTCCAAGAT
CCTTATACCTTAATATTAACGGACTTGTTCAAGTGACAGGGACTGAATATATGATTGTAA
GTGATGAAGAGAATGATGCAGTGTCTTACTTAGTTATTGAATAATACAGAGCATTTGATG
CATGTTGTACGTGCTGCCAAATTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               576-695, - strand, RNAz p=0.889579
               

               
               736-846, - strand, RNAz p=0.99775

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               576-695, - strand, RNAz p=0.889579
               

               
               736-846, - strand, RNAz p=0.99775

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               766-909, - strand, RNAmicro p=0.99614

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               766-909, - strand, RNAmicro p=0.99614

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               61-1284, gnl|bosTau2|chr16 (15377145-15375924)
               

               
               61-1284, gnl|Hg17|chr9 (77260492-77261718)
               

               
               61-1284, gnl|Mm7|chr19 (16317772-16316636)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-1284, gnl|bosTau2|chr16 (15377145-15375924)
               

               
               61-1284, gnl|Hg17|chr9 (77260492-77261718)
               

               
               61-1284, gnl|Mm7|chr19 (16317772-16316636)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               sme (0.305437)
               

               
               tra (0.246184)
               

               
               ldo (0.194005)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               thg (0.126791)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               tra (0.246184)
               

               
               ldo (0.194005)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               thg (0.126791)

	576-695, - strand, RNAz p=0.889579
	736-846, - strand, RNAz p=0.99775

	61-1284, gnl\|bosTau2\|chr16 (15377145-15375924)
	61-1284, gnl\|Hg17\|chr9 (77260492-77261718)
	61-1284, gnl\|Mm7\|chr19 (16317772-16316636)

	sme (0.305437)
	tra (0.246184)
	ldo (0.194005)
	sin (0.174948)
	mga (0.160205)
	lin (0.145603)
	spl (0.143184)
	hyp (0.142837)
	kid (0.129735)
	thg (0.126791)