Non-Coding RNA Search

Ss1.1-rthg24_p14.5

Sequence:


               
               TTAGTTCCATGTGCATTTAATTAGAGGAAGGCTGAAATTGGATTTAACTTATTACTTTTT
CATGGATCACTTTCTTGTCATCACTTCAAATTGGATTGCAGCCCCAGGTAACTAATTATG
AGAGCCACAGGATCAAGAGTGAAAAAAAAAGGTAATTAGGAATAACACTGTCGGACCCTT
GCTGGTCGTCCACTTGTGCTTCGGGAGAAGGGGGGGGGGGAACCCAGCCGTATTTTGTCG
TATTACAGATCACAGAGTTAGAGGTATGTACGGTTGCTAGGCATCCTAGGAGTCTATCAC
CACCCATAGTGGTTTCTGTGATATACAACTGAGTCAAAGATGTCAAGTCGACGTGGTTCC
ACGATCAGCCCCTTAATACCTAGATTAAACTTGTAAAAGCAACAGATTGCTTGTAGGTAT
GAGGCATCTCAACAACTGTGTAGTCTGGGGCCTCACATATATGATTACAACAAAGCTGTC
AAGATGCCTCGGAGCCAAAGTATGGAATATTTTAAGTACGGGGAGTTAGCATTTAATGAA
CGTATTAATGTTCCAGAAACATCATTCATATCTGACAGGAAGACATATCAGTCAGCATAA
CAGTAAGGTGCAGGGTTTATATATCGGGAATTTTTGTCAGAGTTTCCAGCCGACCATTTT
CTTTGCTTCTGGTTGGTTCCCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGTTCCATGTGCATTTAATTAGAGGAAGGCTGAAATTGGATTTAACTTATTACTTTTT
CATGGATCACTTTCTTGTCATCACTTCAAATTGGATTGCAGCCCCAGGTAACTAATTATG
AGAGCCACAGGATCAAGAGTGAAAAAAAAAGGTAATTAGGAATAACACTGTCGGACCCTT
GCTGGTCGTCCACTTGTGCTTCGGGAGAAGGGGGGGGGGGAACCCAGCCGTATTTTGTCG
TATTACAGATCACAGAGTTAGAGGTATGTACGGTTGCTAGGCATCCTAGGAGTCTATCAC
CACCCATAGTGGTTTCTGTGATATACAACTGAGTCAAAGATGTCAAGTCGACGTGGTTCC
ACGATCAGCCCCTTAATACCTAGATTAAACTTGTAAAAGCAACAGATTGCTTGTAGGTAT
GAGGCATCTCAACAACTGTGTAGTCTGGGGCCTCACATATATGATTACAACAAAGCTGTC
AAGATGCCTCGGAGCCAAAGTATGGAATATTTTAAGTACGGGGAGTTAGCATTTAATGAA
CGTATTAATGTTCCAGAAACATCATTCATATCTGACAGGAAGACATATCAGTCAGCATAA
CAGTAAGGTGCAGGGTTTATATATCGGGAATTTTTGTCAGAGTTTCCAGCCGACCATTTT
CTTTGCTTCTGGTTGGTTCCCCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               381-536, + strand, RNAz p=0.985274

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               381-536, + strand, RNAz p=0.985274

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               421-569, - strand, RNAmicro p=0.997496
               

               
               435-519, + strand, RNAmicro p=0.987484

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               421-569, - strand, RNAmicro p=0.997496
               

               
               435-519, + strand, RNAmicro p=0.987484

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-683, gnl|bosTau2|chr22 (24650784-24651484)
               

               
               1-683, gnl|Hg17|chr3 (71237274-71236570)
               

               
               1-683, gnl|Mm7|chr6 (99156275-99155568)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-683, gnl|bosTau2|chr22 (24650784-24651484)
               

               
               1-683, gnl|Hg17|chr3 (71237274-71236570)
               

               
               1-683, gnl|Mm7|chr6 (99156275-99155568)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	421-569, - strand, RNAmicro p=0.997496
	435-519, + strand, RNAmicro p=0.987484

	1-683, gnl\|bosTau2\|chr22 (24650784-24651484)
	1-683, gnl\|Hg17\|chr3 (71237274-71236570)
	1-683, gnl\|Mm7\|chr6 (99156275-99155568)