Non-Coding RNA Search

Ss1.1-rthg25_f5.5

Sequence:


               
               CCTTCCTTTTTAAAAATGTCTTTGCTGAAGGATTTTAAAGTAAATCTCAGACATTGTATC
ATTTCACTTGTAAATACTTAAAAATTGATTTTTAACAGATAAGGTCTTCATAATTTTAAT
CAAGCCACACTATCATTGCCACTCAACAAAATTAATAAGATTTCCTTAATAATCATGTCA
TAATCAGCCTGTATTCAATTTTCCTATCTCAAAAATATCTTCCTCCAGGTTAAGTCAGGA
TCCAACATTACATTTAGTTAGTATGTCTCTTTTAAAAACTCTATATAACATTCACCCTGT
TTTTAATTTCTTTCCTCTTGCTATTTATATGAGGAAATAACTAAATCATATATTCTATAG
AATTTCCTCCATTCAAGATCCGGCTGATGGTATCCCCATGGTGTCTAGTTAGATCTAGAA
ACTTGTCTGAAATTTTTTTCCAGGAATACTCCATAGGTGATGCTGTGTACTTTCTTTTGC
ATCACTCCAGGAGGCACATGATATATAGTTGTTCCACTTTCAGTGATCTTAAGTTTGGTC
AGTGATTTTCGGTGCCATCTACCATCAATCTTCCTTATCAGTCTTTCACATAATGTTGTT
AGCAGCCATTGATGATTATTGCCTGGATCTATTATTTCATTAGGATTTGCAAAATAGTGA
TTTGGAGATTCTATCAAACCTTTTGCATTTATTATCTGTGATTCTTCTGTAAAGATAAAC
TTCTCTAAAGCTGAATGGGAAAGATGGGATAAAATGTTTATGAATTTTTAGAATGGGTTA
GAGCCCCAGCAACCTACAAAGGTGACAAAGAGGTTTTTGTTTTTTAGGCTGGGATGTGAC
ACAACCTTCATTTTGAAACATTGTGTTTAGAATGGGTTGGAGCAGGATAATACTATATCT
TTATCTGTGTTTTAAGATACCACATATAAATGATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTCCTTTTTAAAAATGTCTTTGCTGAAGGATTTTAAAGTAAATCTCAGACATTGTATC
ATTTCACTTGTAAATACTTAAAAATTGATTTTTAACAGATAAGGTCTTCATAATTTTAAT
CAAGCCACACTATCATTGCCACTCAACAAAATTAATAAGATTTCCTTAATAATCATGTCA
TAATCAGCCTGTATTCAATTTTCCTATCTCAAAAATATCTTCCTCCAGGTTAAGTCAGGA
TCCAACATTACATTTAGTTAGTATGTCTCTTTTAAAAACTCTATATAACATTCACCCTGT
TTTTAATTTCTTTCCTCTTGCTATTTATATGAGGAAATAACTAAATCATATATTCTATAG
AATTTCCTCCATTCAAGATCCGGCTGATGGTATCCCCATGGTGTCTAGTTAGATCTAGAA
ACTTGTCTGAAATTTTTTTCCAGGAATACTCCATAGGTGATGCTGTGTACTTTCTTTTGC
ATCACTCCAGGAGGCACATGATATATAGTTGTTCCACTTTCAGTGATCTTAAGTTTGGTC
AGTGATTTTCGGTGCCATCTACCATCAATCTTCCTTATCAGTCTTTCACATAATGTTGTT
AGCAGCCATTGATGATTATTGCCTGGATCTATTATTTCATTAGGATTTGCAAAATAGTGA
TTTGGAGATTCTATCAAACCTTTTGCATTTATTATCTGTGATTCTTCTGTAAAGATAAAC
TTCTCTAAAGCTGAATGGGAAAGATGGGATAAAATGTTTATGAATTTTTAGAATGGGTTA
GAGCCCCAGCAACCTACAAAGGTGACAAAGAGGTTTTTGTTTTTTAGGCTGGGATGTGAC
ACAACCTTCATTTTGAAACATTGTGTTTAGAATGGGTTGGAGCAGGATAATACTATATCT
TTATCTGTGTTTTAAGATACCACATATAAATGATAT

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               281-425, gnl|bosTau2|chr11 (18724947-18724804)
               

               
               281-425, gnl|canFam2|chr17 (32596627-32596974)
               

               
               281-425, gnl|hg17|chr2 (37240392-37240720)
               

               
               281-425, gnl|loxAfr1|scaffold_3365 (84802-85175)
               

               
               281-425, gnl|mm7|chr17 (77147109-77147438)
               

               
               281-425, gnl|panTro1|chr12_random (16671126-16670797)
               

               
               281-425, gnl|rheMac2|chr13 (37090122-37090452)
               


               
               559-739, gnl|bosTau2|chr11 (18724417-18724238)
               

               
               559-739, gnl|Hg17|chr2 (37240248-37240072)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               281-425, gnl|bosTau2|chr11 (18724947-18724804)
               

               
               281-425, gnl|canFam2|chr17 (32596627-32596974)
               

               
               281-425, gnl|hg17|chr2 (37240392-37240720)
               

               
               281-425, gnl|loxAfr1|scaffold_3365 (84802-85175)
               

               
               281-425, gnl|mm7|chr17 (77147109-77147438)
               

               
               281-425, gnl|panTro1|chr12_random (16671126-16670797)
               

               
               281-425, gnl|rheMac2|chr13 (37090122-37090452)
               


               
               559-739, gnl|bosTau2|chr11 (18724417-18724238)
               

               
               559-739, gnl|Hg17|chr2 (37240248-37240072)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               hea (0.204499)
               

               
               fat (0.147427)
               

               
               thg (0.126791)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               fat (0.147427)
               

               
               thg (0.126791)

	281-425, gnl\|bosTau2\|chr11 (18724947-18724804)
	281-425, gnl\|canFam2\|chr17 (32596627-32596974)
	281-425, gnl\|hg17\|chr2 (37240392-37240720)
	281-425, gnl\|loxAfr1\|scaffold_3365 (84802-85175)
	281-425, gnl\|mm7\|chr17 (77147109-77147438)
	281-425, gnl\|panTro1\|chr12_random (16671126-16670797)
	281-425, gnl\|rheMac2\|chr13 (37090122-37090452)

	559-739, gnl\|bosTau2\|chr11 (18724417-18724238)
	559-739, gnl\|Hg17\|chr2 (37240248-37240072)