Ss1.1-rthg26_d2.5
|
AAGTATTCTCCTCATTCGCAAGATTTATATTCTAATGCAAAATCTGGGACCTTTACCTAA
TGATGTTTGTTTGACCATAGAAACTTTTTTACTACGATGAAGTTACACCCCCAGATTACC
AGCCTCCTGGTTTTAAGGATGGAGATTGTGAAGGAGTAATATTTGAAGGGGAGCCTATGT
ACCTAAATGTGGGAGAAGTCCCAACACCTTTTCACACTTTCAAAGTAAAAGTGACCACTG
AGAAAGAACGAATGGAAAATATTGATTCAGGTATATTATCACCAAAACAAATAAAAACAC
CACTGCAAAAAATTCTCATGGACAAAGATGATTTAGAAGATGAACAGGAAAGTGCATTCT
TGGATGATTTTGACATTGAAACTAAAATGGAAGAGCAGAAAAAAAAACTTGGATCTTCTG
AACTTGGAGAGCCAAATTTAGTTTGTGAGGAAGATGAAATTATGAGGTCTAAAGAAAGTC
CGGAGCTTTCAATTTCTCATTCTCAGGTTGAGCAGTTAGTCAGTAAAACATCTGAGCTTG
ATGTGTCTGAAAGCAAAACCAGAAGTGGAAAAATCTTTCAGAATAAAATGGCTAATGGAA
ATCAACAAATAAAATCTAAGGAAAGTCGGAAGAGAAGTCAGCTTGAATCTGGGAAAACAG
TTCTTCATCACTTTGATTCGTCTAGTCAAGATTCAGTGCCAAAAAGAAGAAAGTTTAGTG
AACCAAAGGAACATATATAAAAAAATGATTTTCTTCATGTTTGCAAAGTTCTTCACAACA
TTTAAATGAAAGGACACTATATTACTATTTTAAGGTGTGTTTGCCCTACCACTGAAAACT
TATAGGTAGTCTTAAGCAGTTAGTACACTGAAATGAATTCTTAGCTATCATATGATGATC
TTTAATCTTATCTGAGACAAATTCAAGAGAACTTTTGAGTAAGAACAAAAATAACCAGTG
TTGTAATTTATTCTGTTAATTATCTACTCAATTTGATCTATATTCCATTTGGTGGACATT
TCCTTTAAACTTATATTAACTTTTAAGGCCCTCTTAAGCCATTTTTTGAAGTAAATAATG
TTTATTTTGGTATTAAATTTTGATAGGAATTCATTTTTTACCTATGTTAAAACCATATAA
TTTAACTGCCTGTGTTTGTCATTATGTTGTTAAAACAATGTTATTCAGTACTTTGATATA
GTGTATTAACATAATAATATATAATGTGCAATTAAAAATTGGTGCTTACTTTTTTAGCAT
TTTTTACAAGACAAAAAAGACTAAAAGTCTGACATTTTGGGTAGCATAAATAAAACATTG
TTCAGCATCTGT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAGTATTCTCCTCATTCGCAAGATTTATATTCTAATGCAAAATCTGGGACCTTTACCTAA
TGATGTTTGTTTGACCATAGAAACTTTTTTACTACGATGAAGTTACACCCCCAGATTACC
AGCCTCCTGGTTTTAAGGATGGAGATTGTGAAGGAGTAATATTTGAAGGGGAGCCTATGT
ACCTAAATGTGGGAGAAGTCCCAACACCTTTTCACACTTTCAAAGTAAAAGTGACCACTG
AGAAAGAACGAATGGAAAATATTGATTCAGGTATATTATCACCAAAACAAATAAAAACAC
CACTGCAAAAAATTCTCATGGACAAAGATGATTTAGAAGATGAACAGGAAAGTGCATTCT
TGGATGATTTTGACATTGAAACTAAAATGGAAGAGCAGAAAAAAAAACTTGGATCTTCTG
AACTTGGAGAGCCAAATTTAGTTTGTGAGGAAGATGAAATTATGAGGTCTAAAGAAAGTC
CGGAGCTTTCAATTTCTCATTCTCAGGTTGAGCAGTTAGTCAGTAAAACATCTGAGCTTG
ATGTGTCTGAAAGCAAAACCAGAAGTGGAAAAATCTTTCAGAATAAAATGGCTAATGGAA
ATCAACAAATAAAATCTAAGGAAAGTCGGAAGAGAAGTCAGCTTGAATCTGGGAAAACAG
TTCTTCATCACTTTGATTCGTCTAGTCAAGATTCAGTGCCAAAAAGAAGAAAGTTTAGTG
AACCAAAGGAACATATATAAAAAAATGATTTTCTTCATGTTTGCAAAGTTCTTCACAACA
TTTAAATGAAAGGACACTATATTACTATTTTAAGGTGTGTTTGCCCTACCACTGAAAACT
TATAGGTAGTCTTAAGCAGTTAGTACACTGAAATGAATTCTTAGCTATCATATGATGATC
TTTAATCTTATCTGAGACAAATTCAAGAGAACTTTTGAGTAAGAACAAAAATAACCAGTG
TTGTAATTTATTCTGTTAATTATCTACTCAATTTGATCTATATTCCATTTGGTGGACATT
TCCTTTAAACTTATATTAACTTTTAAGGCCCTCTTAAGCCATTTTTTGAAGTAAATAATG
TTTATTTTGGTATTAAATTTTGATAGGAATTCATTTTTTACCTATGTTAAAACCATATAA
TTTAACTGCCTGTGTTTGTCATTATGTTGTTAAAACAATGTTATTCAGTACTTTGATATA
GTGTATTAACATAATAATATATAATGTGCAATTAAAAATTGGTGCTTACTTTTTTAGCAT
TTTTTACAAGACAAAAAAGACTAAAAGTCTGACATTTTGGGTAGCATAAATAAAACATTG
TTCAGCATCTGT
|
|
gi|57098797|ref|XP_533048.1| |
Protein identifier
|
gi|57098797|ref|XP_533048.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
89-349, gnl|bosTau2|chr3 (16845587-16845847) |
|
89-349, gnl|Hg17|chr1 (147492372-147492115) |
|
89-349, gnl|Mm7|chr3 (95451988-95452242) |
| |
|
493-598, gnl|bosTau2|chr3 (16848227-16848329) |
|
493-598, gnl|canFam2|chr17 (62945676-62945805) |
|
493-598, gnl|danRer3|chr16 (29547100-29546970) |
|
493-598, gnl|dasNov1|scaffold_12331 (21792-21653) |
|
493-598, gnl|echTel1|scaffold_324356 (138450-138328) |
|
493-598, gnl|galGal2|chrE26C13 (152049-151916) |
|
493-598, gnl|hg17|chr1 (147488836-147488972) |
|
493-598, gnl|Hg17|chr1 (147488954-147488854) |
|
493-598, gnl|loxAfr1|scaffold_6272 (18912-18786) |
|
493-598, gnl|mm7|chr3 (95455564-95455432) |
|
493-598, gnl|Mm7|chr3 (95455436-95455543) |
|
493-598, gnl|monDom2|scaffold_44 (3893019-3893143) |
|
493-598, gnl|oryCun1|scaffold_193190 (2998-3122) |
|
493-598, gnl|panTro1|chr1 (129225406-129225542) |
|
493-598, gnl|rn3|chr2 (190460006-190459874) |
| |
|
660-1330, gnl|bosTau2|chr3 (16853219-16853883) |
|
660-1330, gnl|Hg17|chr1 (147484283-147483610) |
|
660-1330, gnl|Mm7|chr3 (95461330-95462121) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
89-349, gnl|bosTau2|chr3 (16845587-16845847) |
|
89-349, gnl|Hg17|chr1 (147492372-147492115) |
|
89-349, gnl|Mm7|chr3 (95451988-95452242) |
| |
|
493-598, gnl|bosTau2|chr3 (16848227-16848329) |
|
493-598, gnl|canFam2|chr17 (62945676-62945805) |
|
493-598, gnl|danRer3|chr16 (29547100-29546970) |
|
493-598, gnl|dasNov1|scaffold_12331 (21792-21653) |
|
493-598, gnl|echTel1|scaffold_324356 (138450-138328) |
|
493-598, gnl|galGal2|chrE26C13 (152049-151916) |
|
493-598, gnl|hg17|chr1 (147488836-147488972) |
|
493-598, gnl|Hg17|chr1 (147488954-147488854) |
|
493-598, gnl|loxAfr1|scaffold_6272 (18912-18786) |
|
493-598, gnl|mm7|chr3 (95455564-95455432) |
|
493-598, gnl|Mm7|chr3 (95455436-95455543) |
|
493-598, gnl|monDom2|scaffold_44 (3893019-3893143) |
|
493-598, gnl|oryCun1|scaffold_193190 (2998-3122) |
|
493-598, gnl|panTro1|chr1 (129225406-129225542) |
|
493-598, gnl|rn3|chr2 (190460006-190459874) |
| |
|
660-1330, gnl|bosTau2|chr3 (16853219-16853883) |
|
660-1330, gnl|Hg17|chr1 (147484283-147483610) |
|
660-1330, gnl|Mm7|chr3 (95461330-95462121) |
|
tes (0.207814) |
|
thg (0.126791) |
|
tes (0.207814) |
|
thg (0.126791) |
