Non-Coding RNA Search

Ss1.1-rthg26_i15.5

Sequence:


               
               TTTTTTACTTTGCCACACGGAATTGGCCATTTGGAGATTTACTCTGTAAAATTTCAGTGA
TGCTGTTTTATACGAACATGTATGGAAGCATTCTGTTCTTAACCTGTATTAGTGCTGACA
GATTTCTGGCAATTGTCTACCCGTTTAAGTCAAAGACCTTAAGAACTAAACGAAACGCAA
AAATTGTTTGCATTGCTGTATGGTTAACTGTGATGGGAGGAAGTGCACCAGCAGTTTTTT
TTCAGTCTACCCACTCTAAGGGTAACAATACCTTAGAAGCCTGCTTTGAAAATTTTCCAG
AAGCCACATGGAAAACCTATCTCTCAAGGATTGTAATTTTCATTGAAATAGTGGGATTTT
TTATTCCTCTAATTTTAAATGTAACTTGTTCTAGTATGGTGCTAAGAACTTTAAATAAAC
CTGTTACATTAAGTAGAAGCAAAATAAACAAAACGAAGATTTTAAAAATGATTTTTGTAC
ATTTGGTCATCTTCTGCTTCTGTTTTGTGCCTTACAATGTCAACCTTATCTTGTATTCTC
TTATGAGAACACAGACATTTGTGAACTGCTCAGCAGCCAGAGCAGTGAGGACCATGTATC
CGATCACTCTCTGCATTGCTGTTTTAAACTGCTGCTTTGACCCGATCGTTTACTACTTCA
CGTCAGACACGATTCAGAACTCGATAAAAATGAAAAGCTGGTCTACCAGGAGAAGTGACT
CTAGATTCTCTGAAGTTCAAAGCACAGAAAACTTTATTCAACATAACCTACAGATCTTAA
AAAGTAAGATATTTGACGCTGAATCTACTACAGTATAAGCTGCCTGAAATAAAAACACCG
GGACTAAACTGGGACAGAACTTCCAAGTTCCTTCAACTGTGAAAGTGTTTCCTTGGACGA
CTATTTCCCGACCTCTGCAAGAAAATGAACACATGGACATTTTAAAGCTTTTAGTGTTAC
CAAAAACGTATTCAATGTGTAAAGCATTAAAATGTATTCTATTCTTGTACACACTCCATT
TTATTTTTCTAAGCCATTTTGTTTTATATCTTTCTCCTCATTAAAAAAAAAAATCCCTAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTACTTTGCCACACGGAATTGGCCATTTGGAGATTTACTCTGTAAAATTTCAGTGA
TGCTGTTTTATACGAACATGTATGGAAGCATTCTGTTCTTAACCTGTATTAGTGCTGACA
GATTTCTGGCAATTGTCTACCCGTTTAAGTCAAAGACCTTAAGAACTAAACGAAACGCAA
AAATTGTTTGCATTGCTGTATGGTTAACTGTGATGGGAGGAAGTGCACCAGCAGTTTTTT
TTCAGTCTACCCACTCTAAGGGTAACAATACCTTAGAAGCCTGCTTTGAAAATTTTCCAG
AAGCCACATGGAAAACCTATCTCTCAAGGATTGTAATTTTCATTGAAATAGTGGGATTTT
TTATTCCTCTAATTTTAAATGTAACTTGTTCTAGTATGGTGCTAAGAACTTTAAATAAAC
CTGTTACATTAAGTAGAAGCAAAATAAACAAAACGAAGATTTTAAAAATGATTTTTGTAC
ATTTGGTCATCTTCTGCTTCTGTTTTGTGCCTTACAATGTCAACCTTATCTTGTATTCTC
TTATGAGAACACAGACATTTGTGAACTGCTCAGCAGCCAGAGCAGTGAGGACCATGTATC
CGATCACTCTCTGCATTGCTGTTTTAAACTGCTGCTTTGACCCGATCGTTTACTACTTCA
CGTCAGACACGATTCAGAACTCGATAAAAATGAAAAGCTGGTCTACCAGGAGAAGTGACT
CTAGATTCTCTGAAGTTCAAAGCACAGAAAACTTTATTCAACATAACCTACAGATCTTAA
AAAGTAAGATATTTGACGCTGAATCTACTACAGTATAAGCTGCCTGAAATAAAAACACCG
GGACTAAACTGGGACAGAACTTCCAAGTTCCTTCAACTGTGAAAGTGTTTCCTTGGACGA
CTATTTCCCGACCTCTGCAAGAAAATGAACACATGGACATTTTAAAGCTTTTAGTGTTAC
CAAAAACGTATTCAATGTGTAAAGCATTAAAATGTATTCTATTCTTGTACACACTCCATT
TTATTTTTCTAAGCCATTTTGTTTTATATCTTTCTCCTCATTAAAAAAAAAAATCCCTAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|30424718|ref|NP_780325.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30424718|ref|NP_780325.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               482-641, - strand, RNAz p=0.906519

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               482-641, - strand, RNAz p=0.906519

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1084, gnl|bosTau2|chr12 (10193739-10192672)
               

               
               3-1084, gnl|Hg17|chr13 (47884338-47883279)
               

               
               3-1084, gnl|Mm7|chr14 (67920541-67921572)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1084, gnl|bosTau2|chr12 (10193739-10192672)
               

               
               3-1084, gnl|Hg17|chr13 (47884338-47883279)
               

               
               3-1084, gnl|Mm7|chr14 (67920541-67921572)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               sag (0.36543)
               

               
               rec (0.346141)
               

               
               fat (0.294855)
               

               
               tra (0.246184)
               

               
               spc (0.226732)
               

               
               jej (0.197844)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               thg (0.126791)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               rec (0.346141)
               

               
               fat (0.294855)
               

               
               tra (0.246184)
               

               
               spc (0.226732)
               

               
               jej (0.197844)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               thg (0.126791)

	3-1084, gnl\|bosTau2\|chr12 (10193739-10192672)
	3-1084, gnl\|Hg17\|chr13 (47884338-47883279)
	3-1084, gnl\|Mm7\|chr14 (67920541-67921572)

	sag (0.36543)
	rec (0.346141)
	fat (0.294855)
	tra (0.246184)
	spc (0.226732)
	jej (0.197844)
	mgm (0.180343)
	gul (0.177588)
	sin (0.174948)
	mga (0.160205)
	ski (0.146735)
	liv (0.146284)
	pla (0.133672)
	ova (0.129132)
	thg (0.126791)