Non-Coding RNA Search

Ss1.1-rthg26_i8.5

Sequence:


               
               AGTTGCTGATCGTTGTGAAATACTATTTGAAGATCTGGTTTTGAATGAAATTCCAGAAAA
AAAAGATTCTGAAAAAGAGTTCCACATCCTCCCTCACCGAGTTTTTGTCCCCATTCCGGG
ATCTGCTGTAATGTTGTGTGATTATAAATTTGGTGATGAGTCAGCTGAAGAAATAAGAGA
CCATTTTATAGAGATGTTAGATCATATGATTCAAATAGAAGATTTGGAAATTGCAGAGGA
AGTAAACACAGCTTGTGTGAGTTCCTCTGTCAATACTGAAGCCTCATTGGATAACACAGA
TGATGAACAACCAAAGCAGCCAATTAAAACTACAGTAGTGTTGAAAATTCAGCAAAATAT
AGGTATTATATTTCTTCTAAAACACTGAAAAGATGGTATTTTGGACATGAATTTTGTTAC
TTGAAAATTATTTTCATTTCATTTTGCTTTCTTAAAAAAGCTAGATAGGGATTTTCCTTG
AGAGGCTCAGCATGTTAAGGATCCAGTGTTGTCCCTGCTTCAGAGGGTAGGGTTGCTGCT
GTGGCTTGGGTT------------------------ATGCTTCAGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTGCTGATCGTTGTGAAATACTATTTGAAGATCTGGTTTTGAATGAAATTCCAGAAAA
AAAAGATTCTGAAAAAGAGTTCCACATCCTCCCTCACCGAGTTTTTGTCCCCATTCCGGG
ATCTGCTGTAATGTTGTGTGATTATAAATTTGGTGATGAGTCAGCTGAAGAAATAAGAGA
CCATTTTATAGAGATGTTAGATCATATGATTCAAATAGAAGATTTGGAAATTGCAGAGGA
AGTAAACACAGCTTGTGTGAGTTCCTCTGTCAATACTGAAGCCTCATTGGATAACACAGA
TGATGAACAACCAAAGCAGCCAATTAAAACTACAGTAGTGTTGAAAATTCAGCAAAATAT
AGGTATTATATTTCTTCTAAAACACTGAAAAGATGGTATTTTGGACATGAATTTTGTTAC
TTGAAAATTATTTTCATTTCATTTTGCTTTCTTAAAAAAGCTAGATAGGGATTTTCCTTG
AGAGGCTCAGCATGTTAAGGATCCAGTGTTGTCCCTGCTTCAGAGGGTAGGGTTGCTGCT
GTGGCTTGGGTT------------------------ATGCTTCAGGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61844795|ref|XP_586450.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61844795|ref|XP_586450.1|

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               64-251, gnl|bosTau2|chr16 (48972516-48972329)
               

               
               64-251, gnl|canFam2|chr7 (22433168-22433403)
               

               
               64-251, gnl|dasNov1|scaffold_784 (59660-59428)
               

               
               64-251, gnl|echTel1|scaffold_295069 (91456-91223)
               

               
               64-251, gnl|galGal2|chr8 (9850477-9850242)
               

               
               64-251, gnl|hg17|chr1 (183106845-183107080)
               

               
               64-251, gnl|Hg17|chr1 (183106870-183107057)
               

               
               64-251, gnl|mm7|chr1 (150297832-150297636)
               

               
               64-251, gnl|Mm7|chr1 (150297815-150297643)
               

               
               64-251, gnl|monDom2|scaffold_16 (40822765-40823000)
               

               
               64-251, gnl|oryCun1|scaffold_178719 (93327-93092)
               

               
               64-251, gnl|panTro1|chr1 (165687571-165687806)
               

               
               64-251, gnl|rheMac2|chr1 (184320295-184320060)
               

               
               64-251, gnl|rn3|chr13 (64682501-64682307)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-251, gnl|bosTau2|chr16 (48972516-48972329)
               

               
               64-251, gnl|canFam2|chr7 (22433168-22433403)
               

               
               64-251, gnl|dasNov1|scaffold_784 (59660-59428)
               

               
               64-251, gnl|echTel1|scaffold_295069 (91456-91223)
               

               
               64-251, gnl|galGal2|chr8 (9850477-9850242)
               

               
               64-251, gnl|hg17|chr1 (183106845-183107080)
               

               
               64-251, gnl|Hg17|chr1 (183106870-183107057)
               

               
               64-251, gnl|mm7|chr1 (150297832-150297636)
               

               
               64-251, gnl|Mm7|chr1 (150297815-150297643)
               

               
               64-251, gnl|monDom2|scaffold_16 (40822765-40823000)
               

               
               64-251, gnl|oryCun1|scaffold_178719 (93327-93092)
               

               
               64-251, gnl|panTro1|chr1 (165687571-165687806)
               

               
               64-251, gnl|rheMac2|chr1 (184320295-184320060)
               

               
               64-251, gnl|rn3|chr13 (64682501-64682307)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	64-251, gnl\|bosTau2\|chr16 (48972516-48972329)
	64-251, gnl\|canFam2\|chr7 (22433168-22433403)
	64-251, gnl\|dasNov1\|scaffold_784 (59660-59428)
	64-251, gnl\|echTel1\|scaffold_295069 (91456-91223)
	64-251, gnl\|galGal2\|chr8 (9850477-9850242)
	64-251, gnl\|hg17\|chr1 (183106845-183107080)
	64-251, gnl\|Hg17\|chr1 (183106870-183107057)
	64-251, gnl\|mm7\|chr1 (150297832-150297636)
	64-251, gnl\|Mm7\|chr1 (150297815-150297643)
	64-251, gnl\|monDom2\|scaffold_16 (40822765-40823000)
	64-251, gnl\|oryCun1\|scaffold_178719 (93327-93092)
	64-251, gnl\|panTro1\|chr1 (165687571-165687806)
	64-251, gnl\|rheMac2\|chr1 (184320295-184320060)
	64-251, gnl\|rn3\|chr13 (64682501-64682307)