Non-Coding RNA Search

Ss1.1-rthg26_j10.5

Sequence:


               
               TCAGATTCTTTCCGCTGAGCCATGATGGGAATTCCAGCCATTTTTTTTTTTTTAATTCCA
AGATTGTGATTGTTATTAACAGTATTAGATGAAAATTACACTTTAAAGTATTTTAATCAG
GAGGAGAGGTTTGCAGGCCAGGAAAAGAAGAGAAAGGTAATAAATATTGGCTCTACTCCA
GTAGGAACCTGTCTCTGTTTCAGCACAAAGTAAAATATATCTGATGTCCAAATATCAAGA
AAATAAGTTAATTTGTACAGATGAGAGCAACCTGTCTTTGAGATGAACTATCTAGTCTTT
ATACTTCTTTAAATAGAGAATGAGCCTTCTGGTATGTAACTGCCAACAAGGAATGGCCTA
ACCTCTCCAACCACAGTGGGGTGGCAGGTCACTGTGTCACAGTATGTTTTCTCCTATGGG
AAGTATTCAAGAGAGATTGCAACTAACCAGACTCTTATTTAATCAAAGTTGAAATATTTC
TCAGTTGTGTTTCTCTTTCTTTCTTGCCTCCTACTTTGAGATTATAAAGCAAAATAAACA
AAAGCAAACAACAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGATTCTTTCCGCTGAGCCATGATGGGAATTCCAGCCATTTTTTTTTTTTTAATTCCA
AGATTGTGATTGTTATTAACAGTATTAGATGAAAATTACACTTTAAAGTATTTTAATCAG
GAGGAGAGGTTTGCAGGCCAGGAAAAGAAGAGAAAGGTAATAAATATTGGCTCTACTCCA
GTAGGAACCTGTCTCTGTTTCAGCACAAAGTAAAATATATCTGATGTCCAAATATCAAGA
AAATAAGTTAATTTGTACAGATGAGAGCAACCTGTCTTTGAGATGAACTATCTAGTCTTT
ATACTTCTTTAAATAGAGAATGAGCCTTCTGGTATGTAACTGCCAACAAGGAATGGCCTA
ACCTCTCCAACCACAGTGGGGTGGCAGGTCACTGTGTCACAGTATGTTTTCTCCTATGGG
AAGTATTCAAGAGAGATTGCAACTAACCAGACTCTTATTTAATCAAAGTTGAAATATTTC
TCAGTTGTGTTTCTCTTTCTTTCTTGCCTCCTACTTTGAGATTATAAAGCAAAATAAACA
AAAGCAAACAACAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               148-260, - strand, RNAz p=0.93548
               

               
               326-443, - strand, RNAz p=0.749925

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               148-260, - strand, RNAz p=0.93548
               

               
               326-443, - strand, RNAz p=0.749925

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               70-551, gnl|bosTau2|chr5 (51287529-51288012)
               

               
               70-551, gnl|Hg17|chr12 (26381680-26381155)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-551, gnl|bosTau2|chr5 (51287529-51288012)
               

               
               70-551, gnl|Hg17|chr12 (26381680-26381155)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               spc (0.340097)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.340097)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	148-260, - strand, RNAz p=0.93548
	326-443, - strand, RNAz p=0.749925

	70-551, gnl\|bosTau2\|chr5 (51287529-51288012)
	70-551, gnl\|Hg17\|chr12 (26381680-26381155)

	spc (0.340097)
	aor (0.195274)
	sag (0.182715)
	sin (0.174948)
	spl (0.143184)
	lyg (0.133103)
	thg (0.126791)
	ebs (0.118301)
	jej (0.0989218)