Non-Coding RNA Search

Ss1.1-rthg26_k8.5

Sequence:


               
               CAAACGCTCAGAGTGATCCTCTCACCTCACTGGAGATGTTCAGCTGGATCCATTGTCAGA
GTCCATATAGGTTTCATCTACCTTCCAAGGTCACCAGGCCAAACACTGAATTTCTTTTTC
TTTTTCTTTTTTTGGCTTCGCCTGAGGCCTGCAGAAGTTCCCGGGCCAAGGATTGAACCT
GCACCACAGCTGTAACCAGAGCTGCAGCAGTAACAACGCTGGATCCTTAACCCCCTGAGC
CACAAGGAAACGCTAAACACTGCATTTCTTGATTTTGACCCCTGGATCATTAACTTTTGT
GGGGATGGGGGTGGGGGAATGGGGTCAGAAATAGCCTTAGACAGACCAAGGGAAAACTCA
TCTCTTCTTGAAGAGGACTTGCCCCAGGGAATAATGGGCCACATTGGCTCTTGTTAATGG
GTGATTTTTTTTTTTTTTTTTTCCGTCTGTATAAATACTGTCATTCTCCCAGAATCATGC
ATGTAATGATTAACATTTTGGGTATGCTTTGTTAACTTATTTGAAGAAACTATAAATTAC
CATTCTTATCCTGTAGATATTAGCTGGAGAGTAAATTCAATCTCAATGAATTCATCAGAG
AAATACACTTTACCTGTAGCTTTGCCTGTGAAGAACGAATTCACTTCATAGGGAAGAACA
TATTTCTAATTGTCAGGGATCCTGTGGAATTCAAATCAGTGTCACTTTATGAGTTTTTTT
TTTTTTAATTGTTCTGTATTTTAGGAAGCACATGAAGTTTTAGCATTCAGAAATGTAAAA
TACTCAAAGGGATTTGAATTTTTTTTAATGTTTATTATTTTTTGTAAGTTGTTTTCCAAA
GAGAAGCATAATTTCAGAGATGCTTTGTAGAAAAGCTGGTTTCCTAACAATTTTCAACCT
TTTTCCTACCATTGATAAAGGGAAGAATAATAAATCTGCATTTGTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAACGCTCAGAGTGATCCTCTCACCTCACTGGAGATGTTCAGCTGGATCCATTGTCAGA
GTCCATATAGGTTTCATCTACCTTCCAAGGTCACCAGGCCAAACACTGAATTTCTTTTTC
TTTTTCTTTTTTTGGCTTCGCCTGAGGCCTGCAGAAGTTCCCGGGCCAAGGATTGAACCT
GCACCACAGCTGTAACCAGAGCTGCAGCAGTAACAACGCTGGATCCTTAACCCCCTGAGC
CACAAGGAAACGCTAAACACTGCATTTCTTGATTTTGACCCCTGGATCATTAACTTTTGT
GGGGATGGGGGTGGGGGAATGGGGTCAGAAATAGCCTTAGACAGACCAAGGGAAAACTCA
TCTCTTCTTGAAGAGGACTTGCCCCAGGGAATAATGGGCCACATTGGCTCTTGTTAATGG
GTGATTTTTTTTTTTTTTTTTTCCGTCTGTATAAATACTGTCATTCTCCCAGAATCATGC
ATGTAATGATTAACATTTTGGGTATGCTTTGTTAACTTATTTGAAGAAACTATAAATTAC
CATTCTTATCCTGTAGATATTAGCTGGAGAGTAAATTCAATCTCAATGAATTCATCAGAG
AAATACACTTTACCTGTAGCTTTGCCTGTGAAGAACGAATTCACTTCATAGGGAAGAACA
TATTTCTAATTGTCAGGGATCCTGTGGAATTCAAATCAGTGTCACTTTATGAGTTTTTTT
TTTTTTAATTGTTCTGTATTTTAGGAAGCACATGAAGTTTTAGCATTCAGAAATGTAAAA
TACTCAAAGGGATTTGAATTTTTTTTAATGTTTATTATTTTTTGTAAGTTGTTTTCCAAA
GAGAAGCATAATTTCAGAGATGCTTTGTAGAAAAGCTGGTTTCCTAACAATTTTCAACCT
TTTTCCTACCATTGATAAAGGGAAGAATAATAAATCTGCATTTGTACA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               248-948, gnl|bosTau2|chr1 (67477892-67477186)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               248-948, gnl|bosTau2|chr1 (67477892-67477186)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

Help | Less info


               
               lin (0.291206)
               

               
               ece (0.229305)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               nbm (0.0993246)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               ece (0.229305)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               nbm (0.0993246)

	lin (0.291206)
	ece (0.229305)
	sag (0.182715)
	sin (0.174948)
	fhi (0.169578)
	mga (0.160205)
	spl (0.143184)
	lnt (0.142308)
	ste (0.135208)
	lyg (0.133103)
	ova (0.129132)
	thg (0.126791)
	nbm (0.0993246)