Non-Coding RNA Search

Ss1.1-rthg28_a7.5

Sequence:


               
               GGTGGGATTTGGTGAAAACAAGTTAGTTTGATTTCTCTTTATACAAATTGATAAATAAAA
AGCTCCATCTAAGAAGAAAATATAGAATATTAGAGCTGAAATAAAGCTAAAGGTCATCTC
ATCAACCCCTCTTAATACATTTATAAAAGCTGAGGCCTACACAGGTTTATGTCTCCAAGA
TCACATAACTAGTATCAGATCAAGACACTTAAAAACTGCCCTACAAAATCTTGCCTTTAG
CTTCTCTTCCTTGTCTCATAGATTTTTAGGCCAATTCTATTCAGGGGCTTCACTTTTTTT
CTCTACTACATTTTTTTCTTTCATTTTTCTCTCCTGTAGTTCATATATTTTTTTTCTTCC
ATGGAAACTCAATTTAAATACACATCACATCGTGCGTGTGTACCTGCATGTGTGTGTATG
TGTGTTAAAGGTTAAAGAGTATTAGCTTTGGCATCGGACAGTCCTCAGTTCAGTCCAAGC
TCAACATCTAATTAGCTCCATTTCCTTATCTGAAAAACAAAGATACGTATTAGATTTGTT
TAAGTATTGAATGAAACAATGTATGGAAAGCTCTTACCATGGTTCCTGTCACATAAGAAC
TCAATAAATGATAAATATTTTTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGGATTTGGTGAAAACAAGTTAGTTTGATTTCTCTTTATACAAATTGATAAATAAAA
AGCTCCATCTAAGAAGAAAATATAGAATATTAGAGCTGAAATAAAGCTAAAGGTCATCTC
ATCAACCCCTCTTAATACATTTATAAAAGCTGAGGCCTACACAGGTTTATGTCTCCAAGA
TCACATAACTAGTATCAGATCAAGACACTTAAAAACTGCCCTACAAAATCTTGCCTTTAG
CTTCTCTTCCTTGTCTCATAGATTTTTAGGCCAATTCTATTCAGGGGCTTCACTTTTTTT
CTCTACTACATTTTTTTCTTTCATTTTTCTCTCCTGTAGTTCATATATTTTTTTTCTTCC
ATGGAAACTCAATTTAAATACACATCACATCGTGCGTGTGTACCTGCATGTGTGTGTATG
TGTGTTAAAGGTTAAAGAGTATTAGCTTTGGCATCGGACAGTCCTCAGTTCAGTCCAAGC
TCAACATCTAATTAGCTCCATTTCCTTATCTGAAAAACAAAGATACGTATTAGATTTGTT
TAAGTATTGAATGAAACAATGTATGGAAAGCTCTTACCATGGTTCCTGTCACATAAGAAC
TCAATAAATGATAAATATTTTTAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               319-427, + strand, RNAz p=0.986334
               

               
               340-490, - strand, RNAz p=0.994733

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               319-427, + strand, RNAz p=0.986334
               

               
               340-490, - strand, RNAz p=0.994733

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               16-630, gnl|bosTau2|chr10 (35133894-35133279)
               

               
               16-630, gnl|canFam2|chr30 (25465677-25466281)
               

               
               16-630, gnl|echTel1|scaffold_301094 (12000-12685)
               

               
               16-630, gnl|hg17|chr15 (55368490-55369093)
               

               
               16-630, gnl|Hg17|chr15 (55368736-55369328)
               

               
               16-630, gnl|loxAfr1|scaffold_2453 (7594-6997)
               

               
               16-630, gnl|mm7|chr9 (71878655-71878116)
               

               
               16-630, gnl|Mm7|chr9 (71878457-71877840)
               

               
               16-630, gnl|panTro1|chr16 (55717586-55718188)
               

               
               16-630, gnl|rheMac2|chr7 (35615482-35616076)
               

               
               16-630, gnl|rn3|chr8 (76327659-76327127)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-630, gnl|bosTau2|chr10 (35133894-35133279)
               

               
               16-630, gnl|canFam2|chr30 (25465677-25466281)
               

               
               16-630, gnl|echTel1|scaffold_301094 (12000-12685)
               

               
               16-630, gnl|hg17|chr15 (55368490-55369093)
               

               
               16-630, gnl|Hg17|chr15 (55368736-55369328)
               

               
               16-630, gnl|loxAfr1|scaffold_2453 (7594-6997)
               

               
               16-630, gnl|mm7|chr9 (71878655-71878116)
               

               
               16-630, gnl|Mm7|chr9 (71878457-71877840)
               

               
               16-630, gnl|panTro1|chr16 (55717586-55718188)
               

               
               16-630, gnl|rheMac2|chr7 (35615482-35616076)
               

               
               16-630, gnl|rn3|chr8 (76327659-76327127)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ski (0.146735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	319-427, + strand, RNAz p=0.986334
	340-490, - strand, RNAz p=0.994733

	16-630, gnl\|bosTau2\|chr10 (35133894-35133279)
	16-630, gnl\|canFam2\|chr30 (25465677-25466281)
	16-630, gnl\|echTel1\|scaffold_301094 (12000-12685)
	16-630, gnl\|hg17\|chr15 (55368490-55369093)
	16-630, gnl\|Hg17\|chr15 (55368736-55369328)
	16-630, gnl\|loxAfr1\|scaffold_2453 (7594-6997)
	16-630, gnl\|mm7\|chr9 (71878655-71878116)
	16-630, gnl\|Mm7\|chr9 (71878457-71877840)
	16-630, gnl\|panTro1\|chr16 (55717586-55718188)
	16-630, gnl\|rheMac2\|chr7 (35615482-35616076)
	16-630, gnl\|rn3\|chr8 (76327659-76327127)

	ski (0.146735)
	sug (0.127291)
	thg (0.126791)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)