Non-Coding RNA Search

Ss1.1-rthg28_h15.5

Sequence:


               
               CAGAAGTGTCCATTGTGGACTGCATCTTGGCCCGGGTAGGGGCTGGTGACAGCCAACTGA
AAGGAGTCTCCACATTCATGGCTGAAATGTTAGAGACTGCTTCTATTCTCAGGTCTGCAA
CCAAAGATTCTTTAATAATCATAGATGAATTGGGAAGAGGAACCTCTACCTATGATGGAT
TTGGGTTAGCGTGGGCTATATCAGAGTACATTGCAACAAAGATCGGTGCTTTTTGCATGT
TTGCAACCCATTTTCATGAACTTACTGCCTTAGCCAATCAGATACCAACTGTTAATAATC
TACATGTCACAGCACTAACTACTGAGGAGACCTTAACTATGCTTTATCAGGTGAAGAAAG
GTGTCTGTGATCAAAGTTTTGGGATTCACGTTGCCGAGCTTGCTAATTTCCCCAGGCATG
TAATAGAGTGTGCTAAACAAAAAGCCCTGGAACTAGAGGAGTTTCAGAATATTGGGGCAC
CACAGGAGCATGATGAAATGGAACCAGCGGCAAAGAGATGCTATCTGGAAAGAGAGCAAG
GTGAAAAAATTATTCAGGAGTTCGTATCCAAGGTGAAGCAAGTGCCCTTTACTGAAATGT
CAGAAGAAAACATCACAATGAAGTTAAAACAGCTGAAAGCTGAGGTGATGGCAAAGAATA
ATAGTTTCGTAAATGAAATCATTTCACGAATAAAGGTTACTACGTGAGAAAATGCCCTTA
ATGGAATGAAGATAATATTGATAAGCTCTTGTCTTGTAATGCTTTTGTATTGTTTTATAT
TAACCCTTTTTCTATAGTGTTGGCAGTTGATGCTAATGGGATATCAAGGCAATAAAATAT
TTAGTATACTTTGCTCTATACTTTGCTCTACCTGAGTATATTTTCAAAGAACTTTATTTT
GAGAAATGAGAGCTGTAATGAGGAATACTTAAATGGACATGGGCAATAGTAGACGGTATG
CTGGATTTTATAAATAAAATCATGTAGTGTTTTAATAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAAGTGTCCATTGTGGACTGCATCTTGGCCCGGGTAGGGGCTGGTGACAGCCAACTGA
AAGGAGTCTCCACATTCATGGCTGAAATGTTAGAGACTGCTTCTATTCTCAGGTCTGCAA
CCAAAGATTCTTTAATAATCATAGATGAATTGGGAAGAGGAACCTCTACCTATGATGGAT
TTGGGTTAGCGTGGGCTATATCAGAGTACATTGCAACAAAGATCGGTGCTTTTTGCATGT
TTGCAACCCATTTTCATGAACTTACTGCCTTAGCCAATCAGATACCAACTGTTAATAATC
TACATGTCACAGCACTAACTACTGAGGAGACCTTAACTATGCTTTATCAGGTGAAGAAAG
GTGTCTGTGATCAAAGTTTTGGGATTCACGTTGCCGAGCTTGCTAATTTCCCCAGGCATG
TAATAGAGTGTGCTAAACAAAAAGCCCTGGAACTAGAGGAGTTTCAGAATATTGGGGCAC
CACAGGAGCATGATGAAATGGAACCAGCGGCAAAGAGATGCTATCTGGAAAGAGAGCAAG
GTGAAAAAATTATTCAGGAGTTCGTATCCAAGGTGAAGCAAGTGCCCTTTACTGAAATGT
CAGAAGAAAACATCACAATGAAGTTAAAACAGCTGAAAGCTGAGGTGATGGCAAAGAATA
ATAGTTTCGTAAATGAAATCATTTCACGAATAAAGGTTACTACGTGAGAAAATGCCCTTA
ATGGAATGAAGATAATATTGATAAGCTCTTGTCTTGTAATGCTTTTGTATTGTTTTATAT
TAACCCTTTTTCTATAGTGTTGGCAGTTGATGCTAATGGGATATCAAGGCAATAAAATAT
TTAGTATACTTTGCTCTATACTTTGCTCTACCTGAGTATATTTTCAAAGAACTTTATTTT
GAGAAATGAGAGCTGTAATGAGGAATACTTAAATGGACATGGGCAATAGTAGACGGTATG
CTGGATTTTATAAATAAAATCATGTAGTGTTTTAATAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61871294|ref|XP_581748.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61871294|ref|XP_581748.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               574-693, - strand, RNAz p=0.602129

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               574-693, - strand, RNAz p=0.602129

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               76-363, gnl|bosTau2|chr11 (19897889-19897605)
               

               
               76-363, gnl|Hg17|chr2 (47617057-47617312)
               

               
               76-363, gnl|Mm7|chr17 (86021706-86021980)
               


               
               535-998, gnl|bosTau2|chr11 (19894077-19893625)
               

               
               535-998, gnl|Hg17|chr2 (47621567-47622013)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-363, gnl|bosTau2|chr11 (19897889-19897605)
               

               
               76-363, gnl|Hg17|chr2 (47617057-47617312)
               

               
               76-363, gnl|Mm7|chr17 (86021706-86021980)
               


               
               535-998, gnl|bosTau2|chr11 (19894077-19893625)
               

               
               535-998, gnl|Hg17|chr2 (47621567-47622013)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               thg (0.633955)
               

               
               tra (0.246184)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.633955)
               

               
               tra (0.246184)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	76-363, gnl\|bosTau2\|chr11 (19897889-19897605)
	76-363, gnl\|Hg17\|chr2 (47617057-47617312)
	76-363, gnl\|Mm7\|chr17 (86021706-86021980)

	535-998, gnl\|bosTau2\|chr11 (19894077-19893625)
	535-998, gnl\|Hg17\|chr2 (47621567-47622013)

	thg (0.633955)
	tra (0.246184)
	cmu (0.186393)
	sin (0.174948)
	isp (0.150376)
	bfe (0.149858)
	lin (0.145603)
	csk (0.140746)
	nca (0.136874)
	lyg (0.133103)
	kid (0.129735)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	cty (0.10408)
	eje (0.0988338)